DMR Stats | |
---|---|
Position | chr19:36450351-36451150 (View on UCSC) |
Width | 800bp |
Genomic Context | intergenic |
Nearest Genes | LRFN3 (14253bp away) |
ANODEV p-value | 1.1152260451e-05 |
Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
41828 | chr19 | 36449786 | 36450495 | wgEncodeRegDnaseClusteredV2 | 52 | score:763, srow:577429 |
41828 | chr19 | 36450506 | 36450750 | wgEncodeRegDnaseClusteredV2 | 4 | score:256, srow:577430 |
41828 | chr19 | 36450781 | 36451155 | wgEncodeRegDnaseClusteredV2 | 4 | score:330, srow:577431 |
41828 | chr19 | 36449520 | 36451188 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:336, expCount:3, expNums:21,40,43, expScores:336,245,275, srow:2008966 |
41828 | chr19 | 36449891 | 36450556 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:73, expNums:2,16,18,20,24,37,42,44,49,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,621,627,628,629,630,631,635,636,638,639,640,641,642,644,645,646,647,648,650,651,652,653,654,655,656,658,661,662,663,665,667,668,669,671,672,674,676,677,678,679,682,683,684,685,686,687,689, expScores:261,112,210,109,146,220,201,171,154,276,628,134,149,601,208,241,1000,989,1000,496,780,1000,825,745,623,201,314,406,816,637,791,541,527,814,234,331,166,170,255,109,254,227,121,184,431,287,319,580,240,256,188,103,347,277,285,487,182,118,128,238,147,124,119,205,222,213,126,221,96,120,158,521,86, srow:2008968 |
41828 | chr19 | 36449976 | 36451163 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:219, expCount:2, expNums:358,578, expScores:91,174, srow:2008973 |
41828 | chr19 | 36450071 | 36450740 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:175, expCount:1, expNums:8, expScores:175, srow:2008976 |
41828 | chr19 | 36450559 | 36450802 | wgEncodeRegTfbsClusteredV3 | CTCF | score:129, expCount:1, expNums:213, expScores:129, srow:2008977 |
41828 | chr19 | 36450560 | 36450563 | phastConsElements100way | lod=14 | score:255, srow:4261785 |
41828 | chr19 | 36450765 | 36450775 | phastConsElements100way | lod=16 | score:268, srow:4261786 |
41828 | chr19 | 36451103 | 36451107 | phastConsElements100way | lod=13 | score:247, srow:4261787 |
41828 | chr19 | 36451141 | 36451148 | phastConsElements100way | lod=16 | score:268, srow:4261788 |
41828 | chr19 | 36449872 | 36451135 | cpgIsland | CpG: 117 | length:1264, cpgNum:117, gcNum:839, perCpg:18.5, perGc:66.4, obsExp:0.84, srow:13548 |
41828 | chr19 | 36451136 | 36453135 | cpgShore | — | values(x.gr)[overs$srow, ]:24437 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
41828 | cellmeth_recounts | PrEC: 28, LNCaP: 14, DU145: 35 | |
41828 | cellmeth_diffreps_PrECvsLNCaP | A=26, B=3, Length=280, Event=Down, log2FC=-3.12, padj=0.000218204372296623 | |
41828 | tcgameth | site:cg01519784, B=0.11, L=0.18, H=0.26 | |
41828 | tcgameth | site:cg05312084, B=0.18, L=0.24, H=0.24 | |
41828 | tcgameth | site:cg13179216, B=0.23, L=0.24, H=0.28 | |
41828 | tcgameth | site:cg20546331, B=0.14, L=0.18, H=0.2 |