DMR Stats | |
---|---|
Position | chr5:140800351-140801700 (View on UCSC) |
Width | 1350bp |
Genomic Context | promoter |
Nearest Genes | PCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1, PCDHGA4, PCDHGB2, PCDHGA5, PCDHGB3, PCDHGA6, PCDHGA7, PCDHGB4, PCDHGA8, PCDHGB5, PCDHGA9, PCDHGB6, PCDHGA10, PCDHGB7, PCDHGA11 (0bp away) |
ANODEV p-value | 3.46570932221e-06 |
Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
28221 | PCDHGA1 | 23222 | uc003lji.2 | chr5 | 140710252 | 140892548 | + | 1350 | 100.0 | 2.37 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA2 | 23222 | uc003ljk.2 | chr5 | 140718354 | 140892548 | + | 1350 | 100.0 | 0.84 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA3 | 23222 | uc003ljm.2 | chr5 | 140723601 | 140892548 | + | 1350 | 100.0 | 0.42 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGB1 | 23222 | uc003ljo.2 | chr5 | 140729828 | 140892548 | + | 1350 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA4 | 23222 | uc003ljq.2 | chr5 | 140734768 | 140892548 | + | 1350 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGB2 | 23222 | uc003ljs.2 | chr5 | 140739703 | 140892548 | + | 1350 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA5 | 23222 | uc003lju.2 | chr5 | 140743898 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGB3 | 23222 | uc003ljw.2 | chr5 | 140749962 | 140892548 | + | 1350 | 100.0 | 0.13 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA6 | 23222 | uc003ljy.2 | chr5 | 140753651 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA7 | 23222 | uc003lka.2 | chr5 | 140762467 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGB4 | 23222 | uc003lkc.2 | chr5 | 140767452 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA8 | 23222 | uc003lkd.2 | chr5 | 140771483 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGB5 | 23222 | uc003lkf.2 | chr5 | 140777695 | 140892548 | + | 1350 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA9 | 23222 | uc003lkh.2 | chr5 | 140782520 | 140892548 | + | 1350 | 100.0 | 0.34 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGB6 | 23222 | uc003lkj.2 | chr5 | 140787770 | 140892548 | + | 1350 | 100.0 | 0.52 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA10 | 23222 | uc003lkl.2 | chr5 | 140792743 | 140892548 | + | 1350 | 100.0 | 1.39 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGB7 | 23222 | uc003lkn.2 | chr5 | 140797260 | 140892548 | + | 1350 | 100.0 | 25.59 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA11 | 23222 | uc003lko.1 | chr5 | 140800537 | 140803653 | + | 1164 | 86.22 | 0.81 | 0 | 50.81 | E1 (86.22) | 0.0 |
28221 | PCDHGA11 | 23222 | uc003lkp.2 | chr5 | 140800537 | 140892548 | + | 1164 | 86.22 | 1.55 | 0 | 50.81 | E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
28221 | PCDHGA11 | 23222 | uc003lkq.2 | chr5 | 140800537 | 140892548 | + | 1164 | 86.22 | 0.21 | 0 | 50.81 | E1 (86.22), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
28221 | chr5 | 140800401 | 140800915 | wgEncodeRegDnaseClusteredV2 | 109 | score:1000, srow:974648 |
28221 | chr5 | 140800926 | 140801135 | wgEncodeRegDnaseClusteredV2 | 11 | score:499, srow:974649 |
28221 | chr5 | 140801246 | 140801395 | wgEncodeRegDnaseClusteredV2 | 3 | score:158, srow:974650 |
28221 | chr5 | 140801426 | 140801495 | wgEncodeRegDnaseClusteredV2 | 2 | score:203, srow:974651 |
28221 | chr5 | 140800305 | 140800988 | wgEncodeRegTfbsClusteredV3 | PML | score:354, expCount:1, expNums:103, expScores:354, srow:3333270 |
28221 | chr5 | 140800343 | 140800938 | wgEncodeRegTfbsClusteredV3 | NFIC | score:226, expCount:1, expNums:97, expScores:226, srow:3333271 |
28221 | chr5 | 140800360 | 140800795 | wgEncodeRegTfbsClusteredV3 | MAZ | score:188, expCount:2, expNums:297,512, expScores:188,178, srow:3333272 |
28221 | chr5 | 140800361 | 140800740 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:89, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,137,174,213,290,463,493,595,597,598,601,603,604,605,606,607,609,612,618,621,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,689, expScores:884,1000,685,623,162,162,557,531,810,1000,460,941,707,429,1000,134,95,861,332,460,1000,1000,969,274,770,1000,1000,878,1000,1000,493,1000,347,383,680,808,252,266,238,333,984,397,204,519,548,403,654,970,874,452,651,791,747,554,1000,294,723,466,828,527,519,1000,445,840,1000,195,649,653,213,132,266,519,149,1000,1000,796,332,764,445,859,464,195,268,460,352,275,589,442,329, srow:3333273 |
28221 | chr5 | 140800378 | 140801037 | wgEncodeRegTfbsClusteredV3 | MTA3 | score:306, expCount:1, expNums:95, expScores:306, srow:3333274 |
28221 | chr5 | 140800390 | 140800709 | wgEncodeRegTfbsClusteredV3 | POU2F2 | score:232, expCount:1, expNums:106, expScores:232, srow:3333275 |
28221 | chr5 | 140800398 | 140800697 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:548, expCount:3, expNums:322,361,552, expScores:548,224,154, srow:3333276 |
28221 | chr5 | 140800411 | 140800708 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:444, expCount:2, expNums:313,408, expScores:444,210, srow:3333277 |
28221 | chr5 | 140800418 | 140800960 | wgEncodeRegTfbsClusteredV3 | YY1 | score:846, expCount:7, expNums:119,128,133,162,244,245,579, expScores:168,256,520,215,132,202,156, srow:3333278 |
28221 | chr5 | 140800426 | 140800692 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:10, expNums:108,149,193,231,264,310,355,405,466,529, expScores:897,1000,329,421,192,676,1000,370,860,125, srow:3333279 |
28221 | chr5 | 140800466 | 140800729 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:194, expCount:1, expNums:100, expScores:194, srow:3333280 |
28221 | chr5 | 140800473 | 140801148 | wgEncodeRegTfbsClusteredV3 | KAP1 | score:344, expCount:1, expNums:365, expScores:344, srow:3333281 |
28221 | chr5 | 140800491 | 140800743 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:233, expCount:2, expNums:87,216, expScores:233,196, srow:3333282 |
28221 | chr5 | 140800639 | 140801002 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:262, expCount:1, expNums:88, expScores:262, srow:3333283 |
28221 | chr5 | 140800644 | 140800885 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:886, expCount:1, expNums:109, expScores:886, srow:3333284 |
28221 | chr5 | 140800708 | 140801303 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:431, expCount:1, expNums:368, expScores:431, srow:3333285 |
28221 | chr5 | 140800424 | 140800435 | tfbsConsSites | V$E4BP4_01 | score:842, zScore:2.05, srow:4256978 |
28221 | chr5 | 140800552 | 140800581 | tfbsConsSites | V$HOX13_01 | score:705, zScore:1.68, srow:4256979 |
28221 | chr5 | 140800561 | 140800571 | tfbsConsSites | V$NFY_Q6 | score:963, zScore:2.21, srow:4256980 |
28221 | chr5 | 140800842 | 140800856 | tfbsConsSites | V$OCT1_02 | score:872, zScore:2.37, srow:4256981 |
28221 | chr5 | 140800845 | 140800860 | tfbsConsSites | V$BRN2_01 | score:797, zScore:1.64, srow:4256982 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
28221 | cellmeth_recounts | PrEC: 5, LNCaP: 18, DU145: 70 | |
28221 | cellmeth_diffreps_PrECvsDU145 | A=0, B=13, Length=220, Event=Up, log2FC=Inf, padj=0.000941091010072773 | |
28221 | cellmeth_diffreps_PrECvsDU145 | A=1, B=17, Length=300, Event=Up, log2FC=4.09, padj=0.00138789698671783 | |
28221 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=11.22, Length=200, Event=Up, log2FC=Inf, padj=0.00708953135814864 | |
28221 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=15.9, Length=260, Event=Up, log2FC=Inf, padj=0.000457622302526381 | |
28221 | cellexp | id=ENSG00000081853, name=PCDHGA2, PrEC=36, str=158, LNCaP=143, str=96, DU145=11, str=3 | |
28221 | cellexp | id=ENSG00000204956, name=PCDHGA1, PrEC=6, str=21, LNCaP=181, str=97, DU145=21, str=2 | |
28221 | cellexp | id=ENSG00000253305, name=PCDHGB6, PrEC=36, str=69, LNCaP=87, str=56, DU145=42, str=22 | |
28221 | cellexp | id=ENSG00000253485, name=PCDHGA5, PrEC=4, str=41, LNCaP=162, str=109, DU145=34, str=18 | |
28221 | cellexp | id=ENSG00000253537, name=PCDHGA7, PrEC=13, str=142, LNCaP=203, str=111, DU145=205, str=106 | |
28221 | cellexp | id=ENSG00000253731, name=PCDHGA6, PrEC=22, str=128, LNCaP=134, str=106, DU145=54, str=37 | |
28221 | cellexp | id=ENSG00000253767, name=PCDHGA8, PrEC=7, str=34, LNCaP=303, str=488, DU145=12, str=4 | |
28221 | cellexp | id=ENSG00000253846, name=PCDHGA10, PrEC=98, str=158, LNCaP=430, str=305, DU145=43, str=31 | |
28221 | cellexp | id=ENSG00000253873, name=PCDHGA11, PrEC=157, str=176, LNCaP=59, str=31, DU145=18, str=7 | |
28221 | cellexp | id=ENSG00000253910, name=PCDHGB2, PrEC=9, str=57, LNCaP=166, str=133, DU145=359, str=244 | |
28221 | cellexp | id=ENSG00000253953, name=PCDHGB4, PrEC=76, str=469, LNCaP=105, str=59, DU145=28, str=16 | |
28221 | cellexp | id=ENSG00000254122, name=PCDHGB7, PrEC=73, str=160, LNCaP=62, str=35, DU145=94, str=45 | |
28221 | cellexp | id=ENSG00000254221, name=PCDHGB1, PrEC=13, str=60, LNCaP=234, str=371, DU145=8, str=3 | |
28221 | cellexp | id=ENSG00000254245, name=PCDHGA3, PrEC=0, str=20, LNCaP=87, str=59, DU145=3, str=0 | |
28221 | cellexp | id=ENSG00000261934, name=PCDHGA9, PrEC=19, str=28, LNCaP=61, str=20, DU145=46, str=28 | |
28221 | cellexp | id=ENSG00000262209, name=PCDHGB3, PrEC=13, str=128, LNCaP=76, str=60, DU145=63, str=41 | |
28221 | cellexp | id=ENSG00000262576, name=PCDHGA4, PrEC=16, str=313, LNCaP=92, str=110, DU145=12, str=9 | |
28221 | tcgameth | site:cg05870739, B=0.14, L=0.47, H=0.41 | |
28221 | tcgameth | site:cg06572465, B=0.13, L=0.5, H=0.47 | |
28221 | tcgameth | site:cg08395122, B=0.42, L=0.56, H=0.56 | |
28221 | tcgameth | site:cg10679597, B=0.46, L=0.63, H=0.62 | |
28221 | tcgameth | site:cg13598256, B=0.32, L=0.58, H=0.55 | |
28221 | tcgameth | site:cg13718539, B=0.33, L=0.58, H=0.54 | |
28221 | tcgameth | site:cg17857974, B=0.28, L=0.57, H=0.53 | |
28221 | tcgameth | site:cg18118262, B=0.33, L=0.64, H=0.58 | |
28221 | tcgameth | site:cg22175873, B=0.35, L=0.61, H=0.59 | |
28221 | tcgameth | site:cg24954895, B=0.27, L=0.6, H=0.55 | |
28221 | tcgaexp | gene=PCDHGB4, entrez=8641, pos=chr5:140767452-140892548(+), B=192, L=511, M=249, H=215 | |
28221 | tcgaexp | gene=PCDHGA8, entrez=9708, pos=chr5:140767452-140892548(+), B=35, L=193, M=48, H=49 | |
28221 | tcgaexp | gene=PCDHGB7, entrez=56099, pos=chr5:140797214-140892548(+), B=647, L=445, M=489, H=421 | |
28221 | tcgaexp | gene=PCDHGB6, entrez=56100, pos=chr5:140787770-140892548(+), B=275, L=222, M=268, H=231 | |
28221 | tcgaexp | gene=PCDHGB5, entrez=56101, pos=chr5:140777695-140892548(+), B=534, L=942, M=758, H=789 | |
28221 | tcgaexp | gene=PCDHGB3, entrez=56102, pos=chr5:140749962-140892548(+), B=43, L=92, M=60, H=110 | |
28221 | tcgaexp | gene=PCDHGB2, entrez=56103, pos=chr5:140739703-140892548(+), B=208, L=477, M=456, H=948 | |
28221 | tcgaexp | gene=PCDHGB1, entrez=56104, pos=chr5:140729828-140892548(+), B=119, L=500, M=401, H=479 | |
28221 | tcgaexp | gene=PCDHGA11, entrez=56105, pos=chr5:140800537-140892548(+), B=92, L=85, M=109, H=97 | |
28221 | tcgaexp | gene=PCDHGA10, entrez=56106, pos=chr5:140792743-140892548(+), B=357, L=586, M=404, H=516 | |
28221 | tcgaexp | gene=PCDHGA9, entrez=56107, pos=chr5:140782520-140892548(+), B=240, L=145, M=152, H=117 | |
28221 | tcgaexp | gene=PCDHGA7, entrez=56108, pos=chr5:140762467-140892548(+), B=163, L=424, M=275, H=247 | |
28221 | tcgaexp | gene=PCDHGA6, entrez=56109, pos=chr5:140753651-140892548(+), B=169, L=192, M=147, H=217 | |
28221 | tcgaexp | gene=PCDHGA5, entrez=56110, pos=chr5:140743898-140892548(+), B=201, L=783, M=537, H=1529 | |
28221 | tcgaexp | gene=PCDHGA4, entrez=56111, pos=chr5:140734768-140892548(+), B=157, L=356, M=224, H=321 | |
28221 | tcgaexp | gene=PCDHGA3, entrez=56112, pos=chr5:140723601-140892548(+), B=92, L=232, M=124, H=192 | |
28221 | tcgaexp | gene=PCDHGA2, entrez=56113, pos=chr5:140718354-140892548(+), B=236, L=401, M=276, H=511 | |
28221 | tcgaexp | gene=PCDHGA1, entrez=56114, pos=chr5:140710252-140892548(+), B=38, L=108, M=76, H=136 |