DMR 10303 chr1:16758151-16758300 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:16758151-16758300 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | SPATA21 (0bp away) |
| ANODEV p-value | 0.00479910121067 |
| Frequencies | Benign: 6.0 (85.71%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10303 | SPATA21 | 299 | uc001ayl.1 | chr1 | 16722176 | 16763919 | - | 150 | 100.0 | 0.19 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 10303 | SPATA21 | 299 | uc001ayn.3 | chr1 | 16725138 | 16763919 | - | 150 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 10303 | SPATA21 | 299 | uc010occ.2 | chr1 | 16725138 | 16763919 | - | 150 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10303 | chr1 | 16757886 | 16758275 | wgEncodeRegDnaseClusteredV2 | 4 | score:209, srow:12930 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10303 | cellmeth_recounts | PrEC: 5, LNCaP: 0, DU145: 0 |  |
| 10303 | cellexp | id=ENSG00000187144, name=SPATA21, PrEC=0, str=0, LNCaP=0, str=0, DU145=1, str=0 |  |
| 10303 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 10303 | tcgaexp | gene=SPATA21, entrez=374955, pos=chr1:16722176-16763919(-), B=0, L=0, M=0, H=0 |  |
| 10303 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |