DMR 14605 chr6:390651-390800 (150bp)

DMR Stats
Positionchr6:390651-390800 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesIRF4 (938bp away)
ANODEV p-value0.0496596801623
FrequenciesBenign: 2.0 (28.57%), Low: 0.0 (0.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
14605 chr6 390581 390844 wgEncodeRegTfbsClusteredV3 PAX5 score:193, expCount:1, expNums:100, expScores:193, srow:3403499
14605 chr6 390789 396744 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:20, expNums:104,105,123,124,130,131,147,283,306,307,308,326,328,330,332,334,336,338,340,602, expScores:386,349,267,287,392,333,272,133,281,134,216,454,185,159,286,226,182,196,279,139, srow:3403500
14605 chr6 389189 391188 cpgShore — values(x.gr)[overs$srow, ]:39052
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
14605 cellmeth_recounts PrEC: 6, LNCaP: 47, DU145: 26
14605 cellmeth_diffreps_PrECvsLNCaP A=9, B=40, Length=380, Event=Up, log2FC=2.15, padj=0.000191252661498666
14605 cellmeth_diffreps_PrECvsDU145 A=0, B=13, Length=240, Event=Up, log2FC=Inf, padj=0.000941091010072773
14605 tcgaexp gene=GPX5, entrez=2880, pos=chr6:15993-28502728(+), B=17, L=14, M=13, H=29
14605 tcgaexp gene=TRIM27, entrez=5987, pos=chr6:174180-28891768(-), B=3498, L=4532, M=4615, H=4568
14605 tcgaexp gene=OR2W1, entrez=26692, pos=chr6:315387-29012952(-), B=0, L=0, M=0, H=0
14605 tcgaexp gene=SCAND3, entrez=114821, pos=chr6:61611-28555112(-), B=519, L=631, M=811, H=931
14605 tcgaexp gene=ZNF311, entrez=282890, pos=chr6:265991-28973093(-), B=189, L=178, M=186, H=171
14605 tcgaexp gene=OR2B3, entrez=442184, pos=chr6:357384-29055090(-), B=0, L=0, M=0, H=0
14605 tcgaexp gene=OR2J3, entrez=442186, pos=chr6:383070-29080603(+), B=0, L=0, M=1, H=1