DMR 186 chr1:29585951-29586150 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:29585951-29586150 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | PTPRU (0bp away) |
| ANODEV p-value | 0.000425042744772 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186 | PTPRU | 551 | uc001bru.3 | chr1 | 29563028 | 29653325 | + | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (5), E5 (58), I5 (37.5), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0) | 0.0 |
| 186 | PTPRU | 551 | uc001brw.3 | chr1 | 29563028 | 29653325 | + | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (5), E5 (58), I5 (37.5), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0) | 0.0 |
| 186 | PTPRU | 551 | uc009vtq.3 | chr1 | 29563028 | 29653325 | + | 200 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (5), E5 (58), I5 (37.5), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0) | 0.0 |
| 186 | PTPRU | 551 | uc009vtr.3 | chr1 | 29563028 | 29653325 | + | 200 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (5), E5 (58), I5 (37.5), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 186 | chr1 | 29585706 | 29587095 | wgEncodeRegDnaseClusteredV2 | 81 | score:1000, srow:23752 |
| 186 | chr1 | 29585740 | 29586093 | wgEncodeRegTfbsClusteredV3 | CTCF | score:246, expCount:7, expNums:5,213,640,659,662,676,679, expScores:146,246,120,194,162,119,101, srow:87286 |
| 186 | chr1 | 29585817 | 29586206 | wgEncodeRegTfbsClusteredV3 | MAX | score:201, expCount:1, expNums:223, expScores:201, srow:87287 |
| 186 | chr1 | 29585861 | 29586176 | wgEncodeRegTfbsClusteredV3 | YY1 | score:157, expCount:1, expNums:245, expScores:157, srow:87288 |
| 186 | chr1 | 29585932 | 29586136 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:378, expCount:1, expNums:215, expScores:378, srow:87289 |
| 186 | chr1 | 29586028 | 29586651 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:220, expCount:1, expNums:30, expScores:220, srow:87290 |
| 186 | chr1 | 29585981 | 29586004 | tfbsConsSites | V$HTF_01 | score:786, zScore:2.18, srow:64684 |
| 186 | chr1 | 29585985 | 29586001 | tfbsConsSites | V$XBP1_01 | score:795, zScore:1.92, srow:64685 |
| 186 | chr1 | 29585989 | 29585996 | tfbsConsSites | V$ATF6_01 | score:891, zScore:2.02, srow:64686 |
| 186 | chr1 | 29585991 | 29586003 | tfbsConsSites | V$RORA1_01 | score:877, zScore:1.86, srow:64687 |
| 186 | chr1 | 29586025 | 29586042 | tfbsConsSites | V$MIF1_01 | score:779, zScore:1.96, srow:64688 |
| 186 | chr1 | 29586030 | 29586058 | tfbsConsSites | V$MYOGNF1_01 | score:742, zScore:1.79, srow:64689 |
| 186 | chr1 | 29586009 | 29586009 | cosmic | COSM333369 | srow:19014 |
| 186 | chr1 | 29586009 | 29586009 | cosmic | COSM333368 | srow:19015 |
| 186 | chr1 | 29586046 | 29586046 | cosmic | COSM139277 | srow:19016 |
| 186 | chr1 | 29585958 | 29585961 | phastConsElements100way | lod=49 | score:379, srow:123251 |
| 186 | chr1 | 29585963 | 29585967 | phastConsElements100way | lod=70 | score:414, srow:123252 |
| 186 | chr1 | 29585969 | 29585970 | phastConsElements100way | lod=30 | score:330, srow:123253 |
| 186 | chr1 | 29585972 | 29585988 | phastConsElements100way | lod=204 | score:520, srow:123254 |
| 186 | chr1 | 29585990 | 29585991 | phastConsElements100way | lod=37 | score:351, srow:123255 |
| 186 | chr1 | 29585993 | 29586003 | phastConsElements100way | lod=172 | score:503, srow:123256 |
| 186 | chr1 | 29586005 | 29586006 | phastConsElements100way | lod=38 | score:354, srow:123257 |
| 186 | chr1 | 29586008 | 29586015 | phastConsElements100way | lod=115 | score:463, srow:123258 |
| 186 | chr1 | 29586017 | 29586021 | phastConsElements100way | lod=49 | score:379, srow:123259 |
| 186 | chr1 | 29586023 | 29586036 | phastConsElements100way | lod=203 | score:519, srow:123260 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 186 | cellmeth_recounts | PrEC: 23, LNCaP: 42, DU145: 6 |  |
| 186 | cellmeth_diffreps_PrECvsDU145 | A=43, B=5, Length=480, Event=Down, log2FC=-3.1, padj=3.9490593989743e-07 |  |
| 186 | cellmeth_diffreps_LNCaPvsDU145 | A=38.49, B=4.68, Length=440, Event=Down, log2FC=-3.04, padj=9.98631028366022e-06 |  |
| 186 | cellexp | id=ENSG00000060656, name=PTPRU, PrEC=6021, str=4109, LNCaP=3945, str=1962, DU145=1240, str=483 |  |
| 186 | tcgaexp | gene=PTPRU, entrez=10076, pos=chr1:29563028-29653325(+), B=3541, L=2248, M=2360, H=1949 |  |
| 186 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |