DMR 19282 chr12:57857951-57858100 (150bp)
| DMR Stats | |
|---|---|
| Position | chr12:57857951-57858100 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | GLI1 (0bp away) |
| ANODEV p-value | 0.0498998041613 |
| Frequencies | Benign: 2.0 (28.57%), Low: 0.0 (0.0%), High: 5.0 (55.56 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19282 | GLI1 | 6631 | uc001snx.3 | chr12 | 57853918 | 57866047 | + | 150 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 19282 | GLI1 | 6631 | uc009zpp.2 | chr12 | 57853918 | 57858651 | + | 150 | 100.0 | 0.06 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) | 100.0 |
| 19282 | GLI1 | 6631 | uc009zpq.3 | chr12 | 57853918 | 57866047 | + | 150 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 19282 | GLI1 | 6631 | uc009zpr.1 | chr12 | 57854305 | 57858651 | + | 150 | 100.0 | 0.58 | 1 | 0.0 | E1 (0), I1 (100), E2 (0) | 100.0 |
| 19282 | GLI1 | 6631 | uc021qzi.1 | chr12 | 57853918 | 57866047 | + | 150 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 19282 | chr12 | 57857446 | 57858075 | wgEncodeRegDnaseClusteredV2 | 22 | score:1000, srow:275271 |
| 19282 | chr12 | 57857704 | 57858007 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:151, expCount:1, expNums:117, expScores:151, srow:953979 |
| 19282 | chr12 | 57857744 | 57858003 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:189, expCount:1, expNums:116, expScores:189, srow:953980 |
| 19282 | chr12 | 57857754 | 57858073 | wgEncodeRegTfbsClusteredV3 | SP1 | score:147, expCount:1, expNums:112, expScores:147, srow:953981 |
| 19282 | chr12 | 57857860 | 57858002 | wgEncodeRegTfbsClusteredV3 | BATF | score:616, expCount:1, expNums:81, expScores:616, srow:953983 |
| 19282 | chr12 | 57855974 | 57857973 | cpgShelf | — | values(x.gr)[overs$srow, ]:8787 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 19282 | cellmeth_recounts | PrEC: 6, LNCaP: 1, DU145: 4 |  |
| 19282 | cellexp | id=ENSG00000111087, name=GLI1, PrEC=159, str=110, LNCaP=26, str=20, DU145=60, str=20 |  |
| 19282 | tcgaexp | gene=GLI1, entrez=2735, pos=chr12:57853918-57866047(+), B=146, L=178, M=164, H=191 |  |
| 19282 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 19282 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |