DMR Stats | |
---|---|
Position | chr1:2280401-2280600 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | MORN1 (0bp away) |
ANODEV p-value | 9.88278805965e-07 |
Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 0.0 (0.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
23 | MORN1 | 99 | uc001ajb.1 | chr1 | 2252696 | 2322993 | - | 200 | 100.0 | 0.62 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
23 | MORN1 | 99 | uc009vld.3 | chr1 | 2263565 | 2322993 | - | 200 | 100.0 | 2.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
23 | chr1 | 2280226 | 2280975 | wgEncodeRegDnaseClusteredV2 | 8 | score:258, srow:1481 |
23 | chr1 | 2279916 | 2280511 | wgEncodeRegTfbsClusteredV3 | NFIC | score:235, expCount:1, expNums:97, expScores:235, srow:7221 |
23 | chr1 | 2279962 | 2280591 | wgEncodeRegTfbsClusteredV3 | STAT5A | score:376, expCount:1, expNums:114, expScores:376, srow:7222 |
23 | chr1 | 2280032 | 2280431 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:808, expCount:1, expNums:83, expScores:808, srow:7224 |
23 | chr1 | 2280109 | 2280401 | wgEncodeRegTfbsClusteredV3 | NFATC1 | score:689, expCount:1, expNums:96, expScores:689, srow:7225 |
23 | chr1 | 2278658 | 2280657 | cpgShelf | — | values(x.gr)[overs$srow, ]:178 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
23 | cellmeth_recounts | PrEC: 13, LNCaP: 4, DU145: 6 | |
23 | cellmeth_diffreps_PrECvsLNCaP | A=1091, B=225, Length=1620, Event=Down, log2FC=-2.28, padj=0 | |
23 | cellmeth_diffreps_PrECvsDU145 | A=1089, B=43, Length=1600, Event=Down, log2FC=-4.66, padj=0 | |
23 | cellmeth_diffreps_LNCaPvsDU145 | A=213.81, B=30.87, Length=620, Event=Down, log2FC=-2.79, padj=0 | |
23 | cellexp | id=ENSG00000116151, name=MORN1, PrEC=59, str=110, LNCaP=366, str=166, DU145=90, str=55 | |
23 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
23 | tcgaexp | gene=MORN1, entrez=79906, pos=chr1:2252696-2322993(-), B=219, L=217, M=237, H=224 | |
23 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |