DMR 24360 chr22:37964601-37964750 (150bp)
| DMR Stats | |
|---|---|
| Position | chr22:37964601-37964750 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | CDC42EP1 (0bp away) |
| ANODEV p-value | 0.0499302963134 |
| Frequencies | Benign: 4.0 (57.14%), Low: 0.0 (0.0%), High: 5.0 (55.56 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24360 | CDC42EP1 | 19476 | uc003asz.4 | chr22 | 37956471 | 37965410 | + | 150 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 24360 | chr22 | 37964341 | 37964735 | wgEncodeRegDnaseClusteredV2 | 7 | score:308, srow:769846 |
| 24360 | chr22 | 37964412 | 37968255 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:24, expNums:11,62,78,163,168,191,192,206,207,229,249,275,362,402,403,445,446,447,523,526,527,563,619,622, expScores:214,586,246,250,297,351,307,142,248,327,229,284,149,293,276,100,326,308,175,418,178,195,178,238, srow:2683960 |
| 24360 | chr22 | 37964650 | 37964659 | tfbsConsSites | V$CDPCR3HD_01 | score:930, zScore:2.55, srow:3242930 |
| 24360 | chr22 | 37964665 | 37964685 | tfbsConsSites | V$NRSF_01 | score:706, zScore:1.65, srow:3242931 |
| 24360 | chr22 | 37964745 | 37964745 | cosmic | COSM1416151 | srow:791866 |
| 24360 | chr22 | 37964604 | 37964608 | phastConsElements100way | lod=29 | score:327, srow:5608832 |
| 24360 | chr22 | 37964613 | 37964615 | phastConsElements100way | lod=21 | score:295, srow:5608833 |
| 24360 | chr22 | 37964666 | 37964668 | phastConsElements100way | lod=27 | score:320, srow:5608834 |
| 24360 | chr22 | 37964696 | 37964715 | phastConsElements100way | lod=98 | score:447, srow:5608835 |
| 24360 | chr22 | 37964717 | 37964722 | phastConsElements100way | lod=22 | score:300, srow:5608836 |
| 24360 | chr22 | 37964747 | 37964749 | phastConsElements100way | lod=21 | score:295, srow:5608837 |
| 24360 | chr22 | 37962820 | 37964819 | cpgShore | — | values(x.gr)[overs$srow, ]:32090 |
- 12 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 24360 | cellmeth_recounts | PrEC: 15, LNCaP: 10, DU145: 0 |  |
| 24360 | cellmeth_diffreps_PrECvsDU145 | A=26, B=0, Length=400, Event=Down, log2FC=-Inf, padj=1.82506503014393e-07 |  |
| 24360 | cellexp | id=ENSG00000128283, name=CDC42EP1, PrEC=7369, str=3578, LNCaP=555, str=55, DU145=3680, str=3980 |  |
| 24360 | tcgaexp | gene=CDC42EP1, entrez=11135, pos=chr22:37956471-37965410(+), B=2681, L=3351, M=3194, H=2873 |  |