DMR 25946 chr1:247496051-247496450 (400bp)

DMR Stats
Positionchr1:247496051-247496450 (View on UCSC)
Width400bp
Genomic Contextintergenic
Nearest GenesZNF496 (1005bp away)
ANODEV p-value0.00145270279324
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25946 chr1 247495946 247496835 wgEncodeRegDnaseClusteredV2 76 score:730, srow:119536
25946 chr1 247494296 247496692 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:50, expNums:61,62,78,105,131,146,147,163,168,191,192,206,207,228,229,259,307,328,330,332,334,336,338,340,362,366,402,445,446,465,520,521,522,523,524,525,563,564,577,583,596,599,610,613,619,622,632,633,634,637, expScores:473,632,290,618,418,365,343,222,441,314,406,217,251,268,1000,302,136,285,162,360,346,208,171,362,135,187,755,81,199,463,167,247,177,225,196,321,251,402,149,379,304,186,176,160,236,350,470,363,225,312, srow:436558
25946 chr1 247494975 247496113 wgEncodeRegTfbsClusteredV3 MYC score:784, expCount:15, expNums:382,485,487,488,489,490,560,561,575,600,611,614,620,624,626, expScores:139,121,280,157,178,188,354,199,329,138,103,161,131,720,199, srow:436593
25946 chr1 247495398 247496053 wgEncodeRegTfbsClusteredV3 E2F1 score:307, expCount:3, expNums:384,390,572, expScores:191,263,307, srow:436620
25946 chr1 247495591 247496114 wgEncodeRegTfbsClusteredV3 HDAC1 score:180, expCount:1, expNums:26, expScores:180, srow:436634
25946 chr1 247495831 247496230 wgEncodeRegTfbsClusteredV3 NR2F2 score:236, expCount:1, expNums:225, expScores:236, srow:436640
25946 chr1 247495872 247496209 wgEncodeRegTfbsClusteredV3 EBF1 score:186, expCount:2, expNums:86,292, expScores:169,186, srow:436641
25946 chr1 247495908 247496523 wgEncodeRegTfbsClusteredV3 CHD1 score:232, expCount:1, expNums:4, expScores:232, srow:436642
25946 chr1 247495915 247496638 wgEncodeRegTfbsClusteredV3 RBBP5 score:264, expCount:1, expNums:33, expScores:264, srow:436643
25946 chr1 247496255 247496458 wgEncodeRegTfbsClusteredV3 SPI1 score:372, expCount:1, expNums:230, expScores:372, srow:436644
25946 chr1 247496375 247496697 wgEncodeRegTfbsClusteredV3 STAT3 score:374, expCount:4, expNums:566,567,568,569, expScores:322,136,151,374, srow:436645
25946 chr1 247496433 247496742 wgEncodeRegTfbsClusteredV3 MYC score:199, expCount:1, expNums:560, expScores:199, srow:436646
25946 chr1 247495841 247497840 cpgShore — values(x.gr)[overs$srow, ]:4519
  • 13 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25946 cellmeth_recounts PrEC: 0, LNCaP: 425, DU145: 5
25946 cellmeth_diffreps_PrECvsLNCaP A=0, B=543, Length=1300, Event=Up, log2FC=Inf, padj=0
25946 cellmeth_diffreps_LNCaPvsDU145 A=579.42, B=7.48, Length=1260, Event=Down, log2FC=-6.27, padj=0
25946 tcgameth site:cg13911707, B=0.26, L=0.54, H=0.55
25946 tcgameth site:cg24404823, B=0.21, L=0.56, H=0.54