DMR 25947 chr1:247499301-247499450 (150bp)

DMR Stats
Positionchr1:247499301-247499450 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesZNF496 (4255bp away)
ANODEV p-value0.00400360085937
FrequenciesBenign: 4.0 (57.14%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25947 chr1 247498826 247499695 wgEncodeRegDnaseClusteredV2 38 score:717, srow:119541
25947 chr1 247498821 247499330 wgEncodeRegTfbsClusteredV3 POLR2A score:171, expCount:1, expNums:564, expScores:171, srow:436652
25947 chr1 247499229 247499472 wgEncodeRegTfbsClusteredV3 EGR1 score:182, expCount:1, expNums:216, expScores:182, srow:436653
25947 chr1 247499269 247499548 wgEncodeRegTfbsClusteredV3 CTCF score:173, expCount:1, expNums:662, expScores:173, srow:436654
25947 chr1 247497841 247499840 cpgShelf — values(x.gr)[overs$srow, ]:3932
  • 5 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25947 cellmeth_recounts PrEC: 18, LNCaP: 66, DU145: 0
25947 cellmeth_diffreps_PrECvsDU145 A=28, B=0, Length=400, Event=Down, log2FC=-Inf, padj=4.7070673891257e-08
25947 cellmeth_diffreps_LNCaPvsDU145 A=56.66, B=0, Length=400, Event=Down, log2FC=-Inf, padj=0