DMR 25949 chr1:248100301-248100700 (400bp)

DMR Stats
Positionchr1:248100301-248100700 (View on UCSC)
Width400bp
Genomic Contextpromoter
Nearest GenesOR2L13 (0bp away)
ANODEV p-value0.00366539038547
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25949 OR2L13 2833 uc001ids.3 chr1 248100493 248264224 + 208 52.0 0.01 0 100.0 E1 (48.5), I1 (3.75), E2 (0), I2 (0), E3 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25949 chr1 248100141 248100515 wgEncodeRegDnaseClusteredV2 76 score:1000, srow:119749
25949 chr1 248100601 248100770 wgEncodeRegDnaseClusteredV2 7 score:801, srow:119750
25949 chr1 248100058 248100541 wgEncodeRegTfbsClusteredV3 SETDB1 score:149, expCount:1, expNums:533, expScores:149, srow:437370
25949 chr1 248100126 248100645 wgEncodeRegTfbsClusteredV3 FOXM1 score:275, expCount:1, expNums:90, expScores:275, srow:437371
25949 chr1 248100127 248100601 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:89, expNums:0,2,5,9,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,618,621,627,628,629,630,631,635,636,638,639,641,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,669,670,671,672,673,674,675,676,677,678,679,680,681,683,684,685,686,687,688,689, expScores:984,1000,1000,518,446,462,304,709,1000,250,254,414,214,263,125,129,139,1000,123,1000,719,778,1000,961,1000,547,194,1000,1000,326,1000,1000,869,1000,491,329,107,1000,484,990,706,670,635,623,376,425,107,140,1000,134,1000,1000,1000,1000,1000,1000,1000,769,1000,897,1000,559,226,342,300,304,583,380,135,521,158,1000,380,686,170,1000,1000,557,577,1000,500,492,655,112,822,190,1000,1000,91, srow:437372
25949 chr1 248100173 248100612 wgEncodeRegTfbsClusteredV3 MYC score:289, expCount:2, expNums:487,489, expScores:216,289, srow:437373
25949 chr1 248100175 248100490 wgEncodeRegTfbsClusteredV3 EP300 score:173, expCount:1, expNums:519, expScores:173, srow:437374
25949 chr1 248100177 248100612 wgEncodeRegTfbsClusteredV3 MAX score:326, expCount:2, expNums:223,296, expScores:326,179, srow:437375
25949 chr1 248100179 248100488 wgEncodeRegTfbsClusteredV3 BHLHE40 score:212, expCount:1, expNums:472, expScores:212, srow:437376
25949 chr1 248100179 248100614 wgEncodeRegTfbsClusteredV3 MAZ score:343, expCount:2, expNums:297,512, expScores:195,343, srow:437377
25949 chr1 248100193 248100608 wgEncodeRegTfbsClusteredV3 TRIM28 score:245, expCount:1, expNums:242, expScores:245, srow:437378
25949 chr1 248100194 248100613 wgEncodeRegTfbsClusteredV3 BCLAF1 score:182, expCount:1, expNums:84, expScores:182, srow:437379
25949 chr1 248100201 248100480 wgEncodeRegTfbsClusteredV3 JUND score:259, expCount:1, expNums:507, expScores:259, srow:437380
25949 chr1 248100225 248100800 wgEncodeRegTfbsClusteredV3 KDM5B score:299, expCount:1, expNums:31, expScores:299, srow:437381
25949 chr1 248100225 248100685 wgEncodeRegTfbsClusteredV3 UBTF score:357, expCount:2, expNums:548,549, expScores:217,357, srow:437382
25949 chr1 248100235 248100510 wgEncodeRegTfbsClusteredV3 TAL1 score:158, expCount:1, expNums:542, expScores:158, srow:437383
25949 chr1 248100239 248100534 wgEncodeRegTfbsClusteredV3 RCOR1 score:258, expCount:1, expNums:492, expScores:258, srow:437384
25949 chr1 248100247 248100590 wgEncodeRegTfbsClusteredV3 YY1 score:177, expCount:1, expNums:119, expScores:177, srow:437385
25949 chr1 248100249 248100534 wgEncodeRegTfbsClusteredV3 ELF1 score:831, expCount:2, expNums:88,217, expScores:633,831, srow:437386
25949 chr1 248100250 248100424 wgEncodeRegTfbsClusteredV3 GABPA score:437, expCount:1, expNums:220, expScores:437, srow:437387
25949 chr1 248100251 248100558 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:8, expNums:108,149,231,264,310,355,466,529, expScores:671,1000,783,830,409,915,211,209, srow:437388
25949 chr1 248100251 248100529 wgEncodeRegTfbsClusteredV3 SMC3 score:527, expCount:2, expNums:313,535, expScores:527,437, srow:437389
25949 chr1 248100251 248100554 wgEncodeRegTfbsClusteredV3 ZNF143 score:553, expCount:3, expNums:322,361,552, expScores:512,323,553, srow:437390
25949 chr1 248100261 248100636 wgEncodeRegTfbsClusteredV3 TBP score:344, expCount:1, expNums:545, expScores:344, srow:437391
25949 chr1 248100262 248100757 wgEncodeRegTfbsClusteredV3 HMGN3 score:125, expCount:1, expNums:501, expScores:125, srow:437392
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  • 25 of 42 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25949 cellmeth_recounts PrEC: 0, LNCaP: 4, DU145: 22
25949 cellmeth_diffreps_PrECvsDU145 A=0, B=15, Length=300, Event=Up, log2FC=Inf, padj=0.000269565104641442
25949 cellmeth_diffreps_LNCaPvsDU145 A=0, B=12.16, Length=200, Event=Up, log2FC=Inf, padj=0.0042937397703766
25949 cellexp id=ENSG00000196071, name=OR2L13, PrEC=0, str=4, LNCaP=0, str=0, DU145=0, str=0
25949 cellexp id=ENSG00000226191, name=RP11-438H8.8, PrEC=0, str=0, LNCaP=2, str=1, DU145=0, str=0
25949 tcgameth site:cg08944170, B=0.27, L=0.29, H=0.31
25949 tcgameth site:cg20507276, B=0.24, L=0.26, H=0.29
25949 tcgaexp gene=OR2L13, entrez=284521, pos=chr1:248100493-248264224(+), B=13, L=4, M=9, H=13