DMR 25950 chr1:248855651-248855850 (200bp)

DMR Stats
Positionchr1:248855651-248855850 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesOR14I1 (10045bp away)
ANODEV p-value2.09938478407e-05
FrequenciesBenign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25950 chr1 248855261 248855795 wgEncodeRegDnaseClusteredV2 9 score:148, srow:119830
25950 chr1 248855471 248857470 cpgShore — values(x.gr)[overs$srow, ]:4533
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25950 cellmeth_recounts PrEC: 11, LNCaP: 1, DU145: 9
25950 cellmeth_diffreps_PrECvsLNCaP A=293, B=8, Length=960, Event=Down, log2FC=-5.19, padj=0
25950 cellmeth_diffreps_PrECvsDU145 A=287, B=38, Length=860, Event=Down, log2FC=-2.92, padj=0
25950 cellexp id=ENSG00000229703, name=XX-CR54.1, PrEC=0, str=0, LNCaP=1, str=0, DU145=0, str=0