DMR 27009 chr3:55515101-55515250 (150bp)

DMR Stats
Positionchr3:55515101-55515250 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesWNT5A (0bp away)
ANODEV p-value0.0497280753005
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27009 WNT5A 20281 uc003dhn.4 chr3 55499743 55521670 - 150 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
27009 WNT5A 20281 uc010hmw.4 chr3 55499743 55515426 - 150 100.0 0.03 0 100.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
27009 WNT5A 20281 uc010hmx.4 chr3 55499743 55521670 - 150 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27009 chr3 55514781 55517555 wgEncodeRegDnaseClusteredV2 93 score:1000, srow:809665
27009 chr3 55514782 55515157 wgEncodeRegTfbsClusteredV3 TBP score:104, expCount:1, expNums:412, expScores:104, srow:2808622
27009 chr3 55514923 55515876 wgEncodeRegTfbsClusteredV3 POLR2A score:421, expCount:4, expNums:168,275,402,465, expScores:355,421,264,216, srow:2808623
27009 chr3 55514965 55515320 wgEncodeRegTfbsClusteredV3 TAF1 score:175, expCount:1, expNums:169, expScores:175, srow:2808624
27009 chr3 55515006 55515401 wgEncodeRegTfbsClusteredV3 MAX score:201, expCount:1, expNums:395, expScores:201, srow:2808625
27009 chr3 55515056 55515311 wgEncodeRegTfbsClusteredV3 CEBPB score:264, expCount:1, expNums:462, expScores:264, srow:2808626
27009 chr3 55515104 55515557 wgEncodeRegTfbsClusteredV3 CTCF score:414, expCount:12, expNums:609,628,629,630,635,641,642,662,666,669,675,687, expScores:112,414,283,202,124,150,132,201,150,114,130,138, srow:2808627
27009 chr3 55515151 55515386 wgEncodeRegTfbsClusteredV3 RAD21 score:256, expCount:1, expNums:466, expScores:256, srow:2808628
27009 chr3 55515189 55515652 wgEncodeRegTfbsClusteredV3 MAZ score:194, expCount:1, expNums:396, expScores:194, srow:2808629
27009 chr3 55515215 55515474 wgEncodeRegTfbsClusteredV3 SMC3 score:194, expCount:1, expNums:408, expScores:194, srow:2808630
27009 chr3 55515111 55515140 tfbsConsSites V$PAX4_04 score:778, zScore:2.61, srow:3377733
27009 chr3 55515120 55515131 tfbsConsSites V$EGR1_01 score:946, zScore:3.6, srow:3377734
27009 chr3 55515120 55515131 tfbsConsSites V$EGR2_01 score:954, zScore:3.66, srow:3377735
27009 chr3 55515120 55515131 tfbsConsSites V$EGR3_01 score:923, zScore:3.19, srow:3377736
27009 chr3 55515120 55515131 tfbsConsSites V$NGFIC_01 score:971, zScore:3.99, srow:3377737
27009 chr3 55515172 55515181 tfbsConsSites V$P53_02 score:942, zScore:1.7, srow:3377738
27009 chr3 55515172 55515187 tfbsConsSites V$AHRARNT_01 score:889, zScore:2.8, srow:3377739
27009 chr3 55515178 55515187 tfbsConsSites V$CDPCR1_01 score:848, zScore:1.91, srow:3377740
27009 chr3 55515200 55515221 tfbsConsSites V$TCF11MAFG_01 score:762, zScore:2.05, srow:3377741
27009 chr3 55514806 55515165 phastConsElements100way lod=2290 score:759, srow:5851918
27009 chr3 55515169 55515201 phastConsElements100way lod=133 score:478, srow:5851919
27009 chr3 55515204 55515248 phastConsElements100way lod=139 score:482, srow:5851920
27009 chr3 55515153 55515613 cpgIsland CpG: 34 length:461, cpgNum:34, gcNum:301, perCpg:14.8, perGc:65.3, obsExp:0.7, srow:18613
27009 chr3 55513153 55515152 cpgShore — values(x.gr)[overs$srow, ]:33611
  • 24 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27009 cellmeth_recounts PrEC: 1, LNCaP: 18, DU145: 1
27009 cellmeth_diffreps_PrECvsLNCaP A=0, B=12, Length=240, Event=Up, log2FC=Inf, padj=0.00157949948552458
27009 cellmeth_diffreps_LNCaPvsDU145 A=11.76, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00547907730955432
27009 cellexp id=ENSG00000114251, name=WNT5A, PrEC=1438, str=9043, LNCaP=236, str=227, DU145=394, str=270
27009 tcgameth site:cg15585318, B=0.06, L=0.2, H=0.21
27009 tcgaexp gene=WNT5A, entrez=7474, pos=chr3:55499743-55521670(-), B=1903, L=779, M=1504, H=4353