DMR 27631 chr4:85416651-85418600 (1950bp)

DMR Stats
Positionchr4:85416651-85418600 (View on UCSC)
Width1950bp
Genomic Contextexon
Nearest GenesNKX6-1 (0bp away)
ANODEV p-value4.86518786614e-06
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27631 NKX6-1 21816 uc003hpa.1 chr4 85414436 85419387 - 1950 100.0 0.27 0 0.0 E1 (0), I1 (82.26), E2 (8.87), I2 (8.92), E3 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27631 chr4 85416546 85417375 wgEncodeRegDnaseClusteredV2 19 score:293, srow:893291
27631 chr4 85417466 85417475 wgEncodeRegDnaseClusteredV2 2 score:212, srow:893292
27631 chr4 85417486 85418710 wgEncodeRegDnaseClusteredV2 49 score:995, srow:893293
27631 chr4 85416387 85416919 wgEncodeRegTfbsClusteredV3 SUZ12 score:98, expCount:1, expNums:358, expScores:93, srow:3072494
27631 chr4 85416580 85420822 wgEncodeRegTfbsClusteredV3 EZH2 score:782, expCount:8, expNums:6,13,15,17,21,38,40,43, expScores:343,393,507,187,334,244,276,321, srow:3072495
27631 chr4 85417391 85418357 wgEncodeRegTfbsClusteredV3 CTBP2 score:293, expCount:1, expNums:348, expScores:184, srow:3072496
27631 chr4 85417525 85417788 wgEncodeRegTfbsClusteredV3 CEBPB score:247, expCount:1, expNums:343, expScores:247, srow:3072497
27631 chr4 85417639 85418513 wgEncodeRegTfbsClusteredV3 CHD1 score:320, expCount:1, expNums:4, expScores:318, srow:3072498
27631 chr4 85417720 85418029 wgEncodeRegTfbsClusteredV3 SUZ12 score:92, expCount:1, expNums:358, expScores:92, srow:3072499
27631 chr4 85418136 85418445 wgEncodeRegTfbsClusteredV3 SUZ12 score:156, expCount:1, expNums:358, expScores:156, srow:3072500
27631 chr4 85416836 85416850 tfbsConsSites V$TAXCREB_01 score:863, zScore:3.21, srow:3818114
27631 chr4 85416839 85416860 tfbsConsSites V$OLF1_01 score:795, zScore:1.69, srow:3818115
27631 chr4 85416891 85416902 tfbsConsSites V$FOXD3_01 score:885, zScore:1.68, srow:3818116
27631 chr4 85416939 85416951 tfbsConsSites V$RORA2_01 score:846, zScore:1.77, srow:3818117
27631 chr4 85416943 85416961 tfbsConsSites V$AHRARNT_02 score:772, zScore:1.7, srow:3818118
27631 chr4 85416951 85416961 tfbsConsSites V$FOXO4_01 score:922, zScore:1.89, srow:3818119
27631 chr4 85418028 85418037 tfbsConsSites V$CREL_01 score:895, zScore:1.78, srow:3818120
27631 chr4 85418150 85418179 tfbsConsSites V$HOX13_01 score:716, zScore:1.87, srow:3818121
27631 chr4 85416846 85416846 cosmic COSM1541200 srow:902054
27631 chr4 85416866 85416866 cosmic COSM228968 srow:902055
27631 chr4 85416881 85416881 cosmic COSM1058319 srow:902056
27631 chr4 85416882 85416882 cosmic COSM1058320 srow:902057
27631 chr4 85416903 85416903 cosmic COSM307085 srow:902058
27631 chr4 85416912 85416912 cosmic COSM1431455 srow:902059
27631 chr4 85416920 85416920 cosmic COSM1694628 srow:902060
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  • 25 of 56 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27631 cellmeth_recounts PrEC: 17, LNCaP: 3528, DU145: 76
27631 cellmeth_diffreps_PrECvsLNCaP A=33, B=3951, Length=2800, Event=Up, log2FC=6.9, padj=0
27631 cellmeth_diffreps_PrECvsDU145 A=0, B=15, Length=260, Event=Up, log2FC=Inf, padj=0.000269565104641442
27631 cellmeth_diffreps_LNCaPvsDU145 A=4222.73, B=56.12, Length=2760, Event=Down, log2FC=-6.23, padj=0
27631 cellexp id=ENSG00000163623, name=NKX6-1, PrEC=0, str=0, LNCaP=56, str=78, DU145=120, str=55
27631 tcgameth site:cg02489958, B=0.23, L=0.51, H=0.54
27631 tcgameth site:cg10457539, B=0.27, L=0.52, H=0.56
27631 tcgameth site:cg17444738, B=0.27, L=0.5, H=0.51
27631 tcgameth site:cg18297736, B=0.15, L=0.41, H=0.43
27631 tcgameth site:cg22256677, B=0.21, L=0.4, H=0.41
27631 tcgameth site:cg24275315, B=0.28, L=0.54, H=0.53
27631 tcgameth site:cg25830182, B=0.17, L=0.53, H=0.5
27631 tcgaexp gene=NKX6-1, entrez=4825, pos=chr4:85414436-85419387(-), B=1, L=3, M=14, H=24
27631 tcgaexp gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0