DMR 27689 chr4:123747401-123747800 (400bp)

DMR Stats
Positionchr4:123747401-123747800 (View on UCSC)
Width400bp
Genomic Contextpromoter
Nearest GenesFGF2 (62bp away)
ANODEV p-value4.33801143155e-12
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27689 chr4 123747166 123747670 wgEncodeRegDnaseClusteredV2 25 score:467, srow:903822
27689 chr4 123747686 123748455 wgEncodeRegDnaseClusteredV2 98 score:1000, srow:903823
27689 chr4 123747479 123747742 wgEncodeRegTfbsClusteredV3 PAX5 score:224, expCount:1, expNums:100, expScores:224, srow:3106719
27689 chr4 123747504 123747759 wgEncodeRegTfbsClusteredV3 CEBPB score:384, expCount:1, expNums:462, expScores:384, srow:3106720
27689 chr4 123747647 123748016 wgEncodeRegTfbsClusteredV3 MAZ score:183, expCount:1, expNums:512, expScores:183, srow:3106721
27689 chr4 123747666 123749884 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:28, expNums:61,62,105,146,147,168,206,207,228,229,259,275,326,328,332,334,336,338,402,461,465,525,563,564,596,599,610,637, expScores:1000,1000,387,636,321,405,225,385,237,695,476,241,688,173,245,162,207,175,325,161,399,165,424,176,649,799,126,143, srow:3106722
27689 chr4 123747695 123747985 wgEncodeRegTfbsClusteredV3 ZBTB7A score:260, expCount:1, expNums:247, expScores:260, srow:3106723
27689 chr4 123747740 123747989 wgEncodeRegTfbsClusteredV3 NRF1 score:135, expCount:1, expNums:354, expScores:135, srow:3106724
27689 chr4 123747750 123748194 wgEncodeRegTfbsClusteredV3 TAF1 score:862, expCount:3, expNums:157,238,261, expScores:862,118,203, srow:3106725
27689 chr4 123747752 123748161 wgEncodeRegTfbsClusteredV3 GATA2 score:214, expCount:1, expNums:586, expScores:214, srow:3106726
27689 chr4 123747756 123748035 wgEncodeRegTfbsClusteredV3 CREB1 score:127, expCount:1, expNums:47, expScores:127, srow:3106727
27689 chr4 123747586 123747594 phastConsElements100way lod=20 score:290, srow:6692960
27689 chr4 123747685 123747688 phastConsElements100way lod=13 score:247, srow:6692961
27689 chr4 123747741 123748980 cpgIsland CpG: 127 length:1240, cpgNum:127, gcNum:786, perCpg:20.5, perGc:63.4, obsExp:1.02, srow:20081
27689 chr4 123745741 123747740 cpgShore — values(x.gr)[overs$srow, ]:36313
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27689 cellmeth_recounts PrEC: 1, LNCaP: 315, DU145: 15
27689 cellmeth_diffreps_PrECvsLNCaP A=7, B=380, Length=1320, Event=Up, log2FC=5.76, padj=0
27689 cellmeth_diffreps_LNCaPvsDU145 A=394.48, B=13.1, Length=1120, Event=Down, log2FC=-4.91, padj=0
27689 tcgameth site:cg03941587, B=0.46, L=0.72, H=0.69
27689 tcgameth site:cg15128226, B=0.38, L=0.71, H=0.69
27689 tcgaexp gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0