DMR 28825 chr6:108489501-108491450 (1950bp)

DMR Stats
Positionchr6:108489501-108491450 (View on UCSC)
Width1950bp
Genomic Contextintron
Nearest GenesNR2E1 (0bp away)
ANODEV p-value0.000161644488667
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28825 NR2E1 24918 uc003psg.3 chr6 108487215 108510013 + 1950 100.0 0.16 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28825 chr6 108489241 108491475 wgEncodeRegDnaseClusteredV2 76 score:1000, srow:1040187
28825 chr6 108484579 108491591 wgEncodeRegTfbsClusteredV3 EZH2 score:717, expCount:10, expNums:3,6,15,17,19,21,36,38,40,43, expScores:154,289,299,157,107,318,213,233,270,263, srow:3592991
28825 chr6 108489647 108490237 wgEncodeRegTfbsClusteredV3 CTCF score:535, expCount:60, expNums:5,12,16,18,20,37,39,42,44,137,174,290,597,601,603,604,605,606,607,635,636,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,664,667,668,669,671,672,673,674,675,676,677,678,682,683,685,686,687, expScores:285,168,206,168,184,169,115,92,206,181,420,193,407,162,239,422,374,232,491,433,290,369,199,191,190,182,223,378,184,208,154,292,313,235,192,182,112,123,314,535,199,178,338,124,291,144,136,203,210,362,223,285,367,412,154,133,262,438,225,393, srow:3593007
28825 chr6 108489693 108490292 wgEncodeRegTfbsClusteredV3 CTBP2 score:153, expCount:1, expNums:348, expScores:153, srow:3593008
28825 chr6 108489705 108490014 wgEncodeRegTfbsClusteredV3 SUZ12 score:93, expCount:1, expNums:358, expScores:93, srow:3593009
28825 chr6 108489732 108489971 wgEncodeRegTfbsClusteredV3 RAD21 score:301, expCount:2, expNums:149,193, expScores:236,301, srow:3593010
28825 chr6 108490002 108490337 wgEncodeRegTfbsClusteredV3 POLR2A score:201, expCount:1, expNums:256, expScores:201, srow:3593011
28825 chr6 108490529 108491338 wgEncodeRegTfbsClusteredV3 SUZ12 score:230, expCount:2, expNums:358,578, expScores:230,166, srow:3593012
28825 chr6 108491072 108491997 wgEncodeRegTfbsClusteredV3 CTBP2 score:131, expCount:1, expNums:348, expScores:123, srow:3593013
28825 chr6 108489628 108489639 tfbsConsSites V$PAX4_03 score:912, zScore:1.77, srow:4559397
28825 chr6 108490057 108490065 tfbsConsSites V$ZIC1_01 score:919, zScore:1.79, srow:4559398
28825 chr6 108490120 108490131 tfbsConsSites V$OCT1_07 score:858, zScore:1.74, srow:4559399
28825 chr6 108490121 108490130 tfbsConsSites V$POU3F2_02 score:846, zScore:1.67, srow:4559400
28825 chr6 108490124 108490137 tfbsConsSites V$CHX10_01 score:822, zScore:2.03, srow:4559401
28825 chr6 108490124 108490141 tfbsConsSites V$CART1_01 score:812, zScore:2.23, srow:4559402
28825 chr6 108490132 108490143 tfbsConsSites V$CDP_01 score:797, zScore:2.1, srow:4559403
28825 chr6 108490155 108490168 tfbsConsSites V$CEBP_Q2 score:889, zScore:1.86, srow:4559404
28825 chr6 108490163 108490170 tfbsConsSites V$NKX25_02 score:978, zScore:2.85, srow:4559405
28825 chr6 108490171 108490184 tfbsConsSites V$FAC1_01 score:834, zScore:1.66, srow:4559406
28825 chr6 108490189 108490198 tfbsConsSites V$NFKAPPAB50_01 score:920, zScore:2.54, srow:4559407
28825 chr6 108490189 108490210 tfbsConsSites V$OLF1_01 score:803, zScore:1.82, srow:4559408
28825 chr6 108490218 108490232 tfbsConsSites V$E2F_01 score:794, zScore:2.4, srow:4559409
28825 chr6 108490269 108490282 tfbsConsSites V$CEBP_Q2 score:885, zScore:1.78, srow:4559410
28825 chr6 108490324 108490331 tfbsConsSites V$ATF6_01 score:868, zScore:1.67, srow:4559411
28825 chr6 108490324 108490342 tfbsConsSites V$ER_Q6 score:778, zScore:1.69, srow:4559412
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  • 25 of 71 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28825 cellmeth_recounts PrEC: 11, LNCaP: 1390, DU145: 29
28825 cellmeth_diffreps_PrECvsLNCaP A=75, B=3835, Length=6100, Event=Up, log2FC=5.68, padj=0
28825 cellmeth_diffreps_LNCaPvsDU145 A=4099.79, B=95.41, Length=6060, Event=Down, log2FC=-5.43, padj=0
28825 cellexp id=ENSG00000112333, name=NR2E1, PrEC=0, str=0, LNCaP=0, str=0, DU145=35, str=11
28825 tcgameth site:cg00170003, B=0.2, L=0.54, H=0.56
28825 tcgameth site:cg04407470, B=0.14, L=0.6, H=0.62
28825 tcgameth site:cg05135644, B=0.18, L=0.51, H=0.54
28825 tcgameth site:cg05380821, B=0.26, L=0.54, H=0.5
28825 tcgameth site:cg13776285, B=0.41, L=0.68, H=0.68
28825 tcgameth site:cg15347342, B=0.28, L=0.53, H=0.53
28825 tcgameth site:cg23676151, B=0.37, L=0.68, H=0.64
28825 tcgameth site:cg25775494, B=0.22, L=0.55, H=0.53
28825 tcgaexp gene=NR2E1, entrez=7101, pos=chr6:108487215-108510013(+), B=1, L=16, M=9, H=37