DMR 29661 chr7:157484101-157486800 (2700bp)
| DMR Stats | |
|---|---|
| Position | chr7:157484101-157486800 (View on UCSC) |
| Width | 2700bp |
| Genomic Context | intron |
| Nearest Genes | PTPRN2 (0bp away) |
| ANODEV p-value | 7.89913420082e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 5.0 (55.56 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29661 | PTPRN2 | 28063 | uc003wno.3 | chr7 | 157331750 | 158380482 | - | 2700 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (100), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
| 29661 | PTPRN2 | 28063 | uc003wnp.3 | chr7 | 157331750 | 158380482 | - | 2700 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (100), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 29661 | PTPRN2 | 28063 | uc003wnq.3 | chr7 | 157331750 | 158380482 | - | 2700 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (100), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 29661 | PTPRN2 | 28063 | uc003wnr.3 | chr7 | 157331750 | 158380482 | - | 2700 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (100), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 29661 | PTPRN2 | 28063 | uc011kwa.2 | chr7 | 157331750 | 158334468 | - | 2700 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (100), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 29661 | chr7 | 157480901 | 157484575 | wgEncodeRegDnaseClusteredV2 | 86 | score:1000, srow:1135504 |
| 29661 | chr7 | 157484601 | 157486775 | wgEncodeRegDnaseClusteredV2 | 36 | score:1000, srow:1135505 |
| 29661 | chr7 | 157483959 | 157484808 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:672, expCount:2, expNums:6,40, expScores:460,279, srow:3917773 |
| 29661 | chr7 | 157484929 | 157485591 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:332, expCount:2, expNums:6,21, expScores:275,332, srow:3917774 |
| 29661 | chr7 | 157485772 | 157486918 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:297, expCount:1, expNums:36, expScores:244, srow:3917775 |
| 29661 | chr7 | 157486081 | 157486680 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:138, expCount:1, expNums:348, expScores:138, srow:3917776 |
| 29661 | chr7 | 157486326 | 157486669 | wgEncodeRegTfbsClusteredV3 | GABPA | score:181, expCount:1, expNums:140, expScores:181, srow:3917777 |
| 29661 | chr7 | 157486390 | 157486679 | wgEncodeRegTfbsClusteredV3 | REST | score:1000, expCount:3, expNums:144,188,248, expScores:1000,245,1000, srow:3917778 |
| 29661 | chr7 | 157486403 | 157486642 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:175, expCount:1, expNums:149, expScores:175, srow:3917779 |
| 29661 | chr7 | 157486578 | 157487173 | wgEncodeRegTfbsClusteredV3 | TCF7L2 | score:195, expCount:1, expNums:581, expScores:195, srow:3917780 |
| 29661 | chr7 | 157484129 | 157484141 | tfbsConsSites | V$CEBP_01 | score:953, zScore:2.91, srow:5029082 |
| 29661 | chr7 | 157484261 | 157484276 | tfbsConsSites | V$ARP1_01 | score:835, zScore:2.6, srow:5029083 |
| 29661 | chr7 | 157484689 | 157484704 | tfbsConsSites | V$GRE_C | score:818, zScore:1.86, srow:5029084 |
| 29661 | chr7 | 157484709 | 157484723 | tfbsConsSites | V$E47_01 | score:896, zScore:2.28, srow:5029085 |
| 29661 | chr7 | 157484711 | 157484722 | tfbsConsSites | V$LMO2COM_01 | score:936, zScore:1.95, srow:5029086 |
| 29661 | chr7 | 157484714 | 157484733 | tfbsConsSites | V$PPARA_01 | score:740, zScore:1.76, srow:5029087 |
| 29661 | chr7 | 157484768 | 157484777 | tfbsConsSites | V$GATA1_05 | score:888, zScore:1.94, srow:5029088 |
| 29661 | chr7 | 157484769 | 157484782 | tfbsConsSites | V$OCT1_06 | score:868, zScore:1.78, srow:5029089 |
| 29661 | chr7 | 157484773 | 157484786 | tfbsConsSites | V$MEIS1AHOXA9_01 | score:796, zScore:1.87, srow:5029090 |
| 29661 | chr7 | 157484811 | 157484820 | tfbsConsSites | V$CREL_01 | score:957, zScore:2.73, srow:5029091 |
| 29661 | chr7 | 157484811 | 157484820 | tfbsConsSites | V$NFKAPPAB65_01 | score:941, zScore:2.42, srow:5029092 |
| 29661 | chr7 | 157484856 | 157484869 | tfbsConsSites | V$SOX9_B1 | score:966, zScore:3.47, srow:5029093 |
| 29661 | chr7 | 157484858 | 157484867 | tfbsConsSites | V$SOX5_01 | score:941, zScore:1.99, srow:5029094 |
| 29661 | chr7 | 157484866 | 157484886 | tfbsConsSites | V$NRSF_01 | score:711, zScore:1.73, srow:5029095 |
| 29661 | chr7 | 157484875 | 157484892 | tfbsConsSites | V$AP4_01 | score:832, zScore:1.99, srow:5029096 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 29661 | cellmeth_recounts | PrEC: 3, LNCaP: 3389, DU145: 58 |  |
| 29661 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=2732, Length=3360, Event=Up, log2FC=9.42, padj=0 |  |
| 29661 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=220, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 29661 | cellmeth_diffreps_LNCaPvsDU145 | A=2920.63, B=43.03, Length=3360, Event=Down, log2FC=-6.08, padj=0 |  |
| 29661 | cellexp | id=ENSG00000155093, name=PTPRN2, PrEC=16, str=39, LNCaP=272, str=164, DU145=22, str=15 |  |
| 29661 | tcgameth | site:cg04059568, B=0.15, L=0.54, H=0.45 |  |
| 29661 | tcgameth | site:cg07602744, B=0.13, L=0.54, H=0.42 |  |
| 29661 | tcgameth | site:cg18327157, B=0.32, L=0.65, H=0.57 |  |
| 29661 | tcgameth | site:cg18894200, B=0.21, L=0.5, H=0.47 |  |
| 29661 | tcgameth | site:cg19241327, B=0.11, L=0.54, H=0.47 |  |
| 29661 | tcgameth | site:cg27448110, B=0.19, L=0.52, H=0.49 |  |
| 29661 | tcgaexp | gene=PTPRN2, entrez=5799, pos=chr7:157331750-158380482(-), B=5916, L=12123, M=11229, H=8285 |  |