DMR 30491 chr9:102585851-102588000 (2150bp)

DMR Stats
Positionchr9:102585851-102588000 (View on UCSC)
Width2150bp
Genomic Contextexon
Nearest GenesNR4A3 (0bp away)
ANODEV p-value2.58509055892e-05
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
30491 NR4A3 29837 uc004bae.3 chr9 102584137 102596341 + 2150 100.0 0.37 0 0.0 E1 (0), I1 (97.21), E2 (2.79), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
30491 NR4A3 29837 uc004baf.1 chr9 102584137 102629173 + 2150 100.0 0.75 0 0.0 E1 (0), I1 (97.21), E2 (2.79), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
30491 NR4A3 29837 uc022bky.1 chr9 102584137 102629173 + 2150 100.0 0.5 0 0.0 E1 (0), I1 (97.21), E2 (2.79), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30491 chr9 102583961 102586675 wgEncodeRegDnaseClusteredV2 125 score:1000, srow:1227879
30491 chr9 102586706 102588315 wgEncodeRegDnaseClusteredV2 87 score:1000, srow:1227880
30491 chr9 102584900 102586464 wgEncodeRegTfbsClusteredV3 SUZ12 score:205, expCount:2, expNums:358,578, expScores:149,141, srow:4199961
30491 chr9 102585337 102585852 wgEncodeRegTfbsClusteredV3 TFAP2C score:185, expCount:1, expNums:370, expScores:185, srow:4199974
30491 chr9 102585950 102586545 wgEncodeRegTfbsClusteredV3 NFIC score:243, expCount:1, expNums:97, expScores:243, srow:4199976
30491 chr9 102586003 102586438 wgEncodeRegTfbsClusteredV3 MAZ score:177, expCount:1, expNums:297, expScores:177, srow:4199977
30491 chr9 102586025 102586428 wgEncodeRegTfbsClusteredV3 RELA score:484, expCount:3, expNums:325,329,339, expScores:484,258,340, srow:4199978
30491 chr9 102586059 102586336 wgEncodeRegTfbsClusteredV3 EGR1 score:1000, expCount:3, expNums:87,138,216, expScores:866,320,1000, srow:4199979
30491 chr9 102586061 102586376 wgEncodeRegTfbsClusteredV3 EBF1 score:158, expCount:1, expNums:292, expScores:158, srow:4199980
30491 chr9 102586063 102586472 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:172, expCount:1, expNums:316, expScores:172, srow:4199981
30491 chr9 102586065 102587366 wgEncodeRegTfbsClusteredV3 EZH2 score:529, expCount:4, expNums:6,21,36,40, expScores:449,392,234,228, srow:4199982
30491 chr9 102586131 102586357 wgEncodeRegTfbsClusteredV3 RUNX3 score:738, expCount:1, expNums:109, expScores:738, srow:4199983
30491 chr9 102586521 102586910 wgEncodeRegTfbsClusteredV3 MAX score:198, expCount:1, expNums:223, expScores:198, srow:4199984
30491 chr9 102586641 102587023 wgEncodeRegTfbsClusteredV3 RELA score:377, expCount:2, expNums:325,335, expScores:377,281, srow:4199985
30491 chr9 102586653 102587016 wgEncodeRegTfbsClusteredV3 ELF1 score:157, expCount:1, expNums:88, expScores:157, srow:4199986
30491 chr9 102586655 102586894 wgEncodeRegTfbsClusteredV3 EGR1 score:197, expCount:1, expNums:87, expScores:197, srow:4199987
30491 chr9 102586676 102586935 wgEncodeRegTfbsClusteredV3 TCF12 score:143, expCount:1, expNums:116, expScores:143, srow:4199988
30491 chr9 102586687 102586990 wgEncodeRegTfbsClusteredV3 TCF3 score:122, expCount:1, expNums:117, expScores:122, srow:4199989
30491 chr9 102586780 102587299 wgEncodeRegTfbsClusteredV3 FOXM1 score:265, expCount:1, expNums:90, expScores:265, srow:4199990
30491 chr9 102586798 102587386 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:93, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,137,174,213,262,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,621,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:208,103,757,348,357,99,236,195,407,401,224,586,280,338,635,132,645,359,318,99,1000,470,434,408,718,491,866,781,1000,1000,422,1000,480,216,152,311,621,272,369,304,355,387,299,676,521,270,977,789,392,747,709,320,806,1000,1000,1000,1000,950,605,610,613,630,1000,320,909,1000,378,377,240,286,500,423,515,129,261,549,719,711,559,1000,451,635,272,315,220,799,342,292,580,540,267,261,95, srow:4199991
30491 chr9 102586812 102587301 wgEncodeRegTfbsClusteredV3 TAF1 score:169, expCount:1, expNums:157, expScores:169, srow:4199992
30491 chr9 102586829 102587498 wgEncodeRegTfbsClusteredV3 RBBP5 score:191, expCount:1, expNums:8, expScores:191, srow:4199993
30491 chr9 102586863 102587212 wgEncodeRegTfbsClusteredV3 YY1 score:186, expCount:2, expNums:119,128, expScores:186,160, srow:4199994
30491 chr9 102586869 102587132 wgEncodeRegTfbsClusteredV3 PAX5 score:203, expCount:1, expNums:100, expScores:203, srow:4199995
30491 chr9 102586896 102587185 wgEncodeRegTfbsClusteredV3 ZNF143 score:275, expCount:1, expNums:322, expScores:275, srow:4199996
  • Page 1 of 6
  • 25 of 143 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30491 cellmeth_recounts PrEC: 27, LNCaP: 756, DU145: 37
30491 cellmeth_diffreps_PrECvsLNCaP A=45, B=650, Length=2400, Event=Up, log2FC=3.85, padj=0
30491 cellmeth_diffreps_PrECvsDU145 A=25, B=5, Length=260, Event=Down, log2FC=-2.32, padj=0.00450415170397107
30491 cellmeth_diffreps_LNCaPvsDU145 A=694.88, B=29.93, Length=2420, Event=Down, log2FC=-4.54, padj=0
30491 cellexp id=ENSG00000119508, name=NR4A3, PrEC=11, str=20, LNCaP=10, str=10, DU145=612, str=392
30491 tcgameth site:cg01917626, B=0.22, L=0.27, H=0.24
30491 tcgameth site:cg03277560, B=0.57, L=0.73, H=0.67
30491 tcgameth site:cg05933762, B=0.08, L=0.17, H=0.16
30491 tcgaexp gene=NR4A3, entrez=8013, pos=chr9:102584137-102629173(+), B=2446, L=1328, M=1252, H=910