DMR 30929 chr10:22764451-22765650 (1200bp)

DMR Stats
Positionchr10:22764451-22765650 (View on UCSC)
Width1200bp
Genomic Contextintergenic
Nearest GenesLOC100499489 (37592bp away)
ANODEV p-value2.67438404755e-09
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30929 chr10 22764666 22767175 wgEncodeRegDnaseClusteredV2 52 score:569, srow:131536
30929 chr10 22764408 22767196 wgEncodeRegTfbsClusteredV3 EZH2 score:596, expCount:8, expNums:6,15,19,21,36,38,40,43, expScores:290,393,95,408,244,205,310,596, srow:473758
30929 chr10 22764493 22765088 wgEncodeRegTfbsClusteredV3 ZNF263 score:340, expCount:1, expNums:368, expScores:340, srow:473759
30929 chr10 22764627 22765705 wgEncodeRegTfbsClusteredV3 SUZ12 score:165, expCount:2, expNums:358,578, expScores:90,165, srow:473760
30929 chr10 22764947 22765270 wgEncodeRegTfbsClusteredV3 BACH1 score:270, expCount:1, expNums:341, expScores:270, srow:473761
30929 chr10 22764950 22765245 wgEncodeRegTfbsClusteredV3 RUNX3 score:394, expCount:1, expNums:109, expScores:394, srow:473762
30929 chr10 22765002 22765671 wgEncodeRegTfbsClusteredV3 RBBP5 score:171, expCount:1, expNums:8, expScores:171, srow:473763
30929 chr10 22765023 22765278 wgEncodeRegTfbsClusteredV3 HDAC2 score:177, expCount:1, expNums:141, expScores:177, srow:473764
30929 chr10 22765054 22765191 wgEncodeRegTfbsClusteredV3 EGR1 score:483, expCount:1, expNums:87, expScores:483, srow:473765
30929 chr10 22765172 22765421 wgEncodeRegTfbsClusteredV3 FOSL1 score:105, expCount:1, expNums:139, expScores:105, srow:473766
30929 chr10 22764715 22764728 tfbsConsSites V$CHX10_01 score:841, zScore:2.36, srow:542113
30929 chr10 22764881 22764898 tfbsConsSites V$CMYB_01 score:798, zScore:1.84, srow:542114
30929 chr10 22764611 22764621 phastConsElements100way lod=25 score:312, srow:935194
30929 chr10 22764935 22764941 phastConsElements100way lod=19 score:285, srow:935195
30929 chr10 22764982 22764990 phastConsElements100way lod=16 score:268, srow:935196
30929 chr10 22765044 22765059 phastConsElements100way lod=47 score:375, srow:935197
30929 chr10 22764709 22767050 cpgIsland CpG: 217 length:2342, cpgNum:217, gcNum:1527, perCpg:18.5, perGc:65.2, obsExp:0.87, srow:2642
30929 chr10 22762709 22764708 cpgShore — values(x.gr)[overs$srow, ]:4882
  • 18 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30929 cellmeth_recounts PrEC: 15, LNCaP: 131, DU145: 18
30929 cellmeth_diffreps_PrECvsLNCaP A=0, B=91, Length=1020, Event=Up, log2FC=Inf, padj=0
30929 cellmeth_diffreps_PrECvsLNCaP A=108, B=46, Length=320, Event=Down, log2FC=-1.23, padj=2.16303212135049e-05
30929 cellmeth_diffreps_PrECvsDU145 A=596, B=43, Length=1720, Event=Down, log2FC=-3.79, padj=0
30929 cellmeth_diffreps_LNCaPvsDU145 A=90.87, B=3.74, Length=900, Event=Down, log2FC=-4.6, padj=0
30929 cellmeth_diffreps_LNCaPvsDU145 A=53.45, B=10.29, Length=460, Event=Down, log2FC=-2.38, padj=4.17817728070921e-06
30929 tcgameth site:cg00404838, B=0.08, L=0.14, H=0.17
30929 tcgameth site:cg04819760, B=0.43, L=0.64, H=0.61
30929 tcgameth site:cg16636355, B=0.24, L=0.45, H=0.4
30929 tcgaexp gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0