DMR 33163 chr15:41803701-41806250 (2550bp)
| DMR Stats | |
|---|---|
| Position | chr15:41803701-41806250 (View on UCSC) |
| Width | 2550bp |
| Genomic Context | promoter |
| Nearest Genes | LTK (0bp away) |
| ANODEV p-value | 4.40142564402e-07 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 4.0 (44.44 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33163 | LTK | 9387 | uc001zoa.3 | chr15 | 41795840 | 41806085 | - | 2385 | 93.53 | 0.1 | 0 | 26.08 | E1 (8.67), I1 (21.45), E2 (5.65), I2 (3.88), E3 (6.75), I3 (17.33), E4 (5.92), I4 (5.96), E5 (5.76), I5 (9.37), E6 (2.98), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0) | 0.0 |
| 33163 | LTK | 9387 | uc001zob.3 | chr15 | 41795840 | 41806085 | - | 2385 | 93.53 | 0.36 | 0 | 26.08 | E1 (8.67), I1 (21.45), E2 (5.65), I2 (3.88), E3 (6.75), I3 (17.33), E4 (5.92), I4 (5.96), E5 (5.76), I5 (9.37), E6 (2.98), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0) | 0.0 |
| 33163 | LTK | 9387 | uc010bcg.2 | chr15 | 41795840 | 41806085 | - | 2385 | 93.53 | 0.2 | 0 | 26.08 | E1 (8.67), I1 (84.86), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 33163 | LTK | 9387 | uc010ucx.1 | chr15 | 41795840 | 41806085 | - | 2385 | 93.53 | 0.2 | 0 | 26.08 | E1 (8.67), I1 (21.45), E2 (5.65), I2 (3.88), E3 (6.75), I3 (17.33), E4 (5.92), I4 (5.96), E5 (5.76), I5 (9.37), E6 (2.98), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 33163 | chr15 | 41803486 | 41803995 | wgEncodeRegDnaseClusteredV2 | 21 | score:887, srow:393230 |
| 33163 | chr15 | 41804026 | 41804855 | wgEncodeRegDnaseClusteredV2 | 39 | score:837, srow:393231 |
| 33163 | chr15 | 41804866 | 41805050 | wgEncodeRegDnaseClusteredV2 | 2 | score:107, srow:393232 |
| 33163 | chr15 | 41805086 | 41806495 | wgEncodeRegDnaseClusteredV2 | 65 | score:1000, srow:393233 |
| 33163 | chr15 | 41802850 | 41805917 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:1000, expCount:9, expNums:3,6,15,19,21,36,38,40,43, expScores:148,440,229,115,348,215,208,206,338, srow:1324791 |
| 33163 | chr15 | 41804210 | 41804513 | wgEncodeRegTfbsClusteredV3 | CTCF | score:166, expCount:5, expNums:290,597,605,635,664, expScores:129,156,122,166,111, srow:1324793 |
| 33163 | chr15 | 41804716 | 41805025 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:164, expCount:1, expNums:358, expScores:164, srow:1324794 |
| 33163 | chr15 | 41804943 | 41805438 | wgEncodeRegTfbsClusteredV3 | HMGN3 | score:121, expCount:1, expNums:501, expScores:121, srow:1324795 |
| 33163 | chr15 | 41805140 | 41805455 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:752, expCount:2, expNums:86,292, expScores:411,752, srow:1324796 |
| 33163 | chr15 | 41805187 | 41805502 | wgEncodeRegTfbsClusteredV3 | MYC | score:176, expCount:1, expNums:575, expScores:176, srow:1324797 |
| 33163 | chr15 | 41805240 | 41805479 | wgEncodeRegTfbsClusteredV3 | SPI1 | score:163, expCount:1, expNums:126, expScores:163, srow:1324798 |
| 33163 | chr15 | 41805253 | 41805568 | wgEncodeRegTfbsClusteredV3 | YY1 | score:199, expCount:1, expNums:245, expScores:199, srow:1324799 |
| 33163 | chr15 | 41805258 | 41805561 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:170, expCount:1, expNums:117, expScores:170, srow:1324800 |
| 33163 | chr15 | 41805281 | 41805556 | wgEncodeRegTfbsClusteredV3 | MAX | score:281, expCount:2, expNums:223,576, expScores:281,265, srow:1324801 |
| 33163 | chr15 | 41805282 | 41805541 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:202, expCount:1, expNums:116, expScores:202, srow:1324802 |
| 33163 | chr15 | 41805307 | 41805566 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:141, expCount:1, expNums:232, expScores:141, srow:1324803 |
| 33163 | chr15 | 41805307 | 41805490 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:660, expCount:1, expNums:109, expScores:660, srow:1324804 |
| 33163 | chr15 | 41805337 | 41805528 | wgEncodeRegTfbsClusteredV3 | UBTF | score:398, expCount:1, expNums:549, expScores:398, srow:1324805 |
| 33163 | chr15 | 41805483 | 41806228 | wgEncodeRegTfbsClusteredV3 | HDAC1 | score:234, expCount:1, expNums:26, expScores:197, srow:1324806 |
| 33163 | chr15 | 41805579 | 41806460 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:565, expCount:1, expNums:30, expScores:318, srow:1324807 |
| 33163 | chr15 | 41805676 | 41806195 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:219, expCount:1, expNums:357, expScores:219, srow:1324808 |
| 33163 | chr15 | 41805689 | 41806198 | wgEncodeRegTfbsClusteredV3 | SAP30 | score:327, expCount:1, expNums:34, expScores:327, srow:1324809 |
| 33163 | chr15 | 41805728 | 41806117 | wgEncodeRegTfbsClusteredV3 | ETS1 | score:144, expCount:1, expNums:218, expScores:144, srow:1324810 |
| 33163 | chr15 | 41805742 | 41806051 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:121, expCount:1, expNums:358, expScores:121, srow:1324811 |
| 33163 | chr15 | 41805752 | 41806191 | wgEncodeRegTfbsClusteredV3 | UBTF | score:193, expCount:1, expNums:548, expScores:193, srow:1324812 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 33163 | cellmeth_recounts | PrEC: 7, LNCaP: 3834, DU145: 5 |  |
| 33163 | cellmeth_diffreps_PrECvsLNCaP | A=88, B=3909, Length=3320, Event=Up, log2FC=5.47, padj=0 |  |
| 33163 | cellmeth_diffreps_LNCaPvsDU145 | A=4178.9, B=9.35, Length=3320, Event=Down, log2FC=-8.8, padj=0 |  |
| 33163 | cellexp | id=ENSG00000062524, name=LTK, PrEC=1, str=2, LNCaP=4, str=1, DU145=21, str=6 |  |
| 33163 | tcgameth | site:cg02360980, B=0.05, L=0.34, H=0.31 |  |
| 33163 | tcgameth | site:cg03257179, B=0.29, L=0.61, H=0.58 |  |
| 33163 | tcgameth | site:cg07359633, B=0.3, L=0.51, H=0.52 |  |
| 33163 | tcgameth | site:cg07621749, B=0.31, L=0.58, H=0.56 |  |
| 33163 | tcgameth | site:cg16374663, B=0.14, L=0.5, H=0.45 |  |
| 33163 | tcgameth | site:cg25298161, B=0.37, L=0.6, H=0.59 |  |
| 33163 | tcgameth | site:cg27494383, B=0.16, L=0.51, H=0.52 |  |
| 33163 | tcgameth | site:cg27496526, B=0.15, L=0.48, H=0.46 |  |
| 33163 | tcgaexp | gene=LTK, entrez=4058, pos=chr15:41795840-41806085(-), B=10, L=10, M=11, H=11 |  |