DMR 353 chr1:85459201-85459400 (200bp)

DMR Stats
Positionchr1:85459201-85459400 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesMCOLN2 (0bp away)
ANODEV p-value0.0010832246887
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
353 MCOLN2 1097 uc001dkm.3 chr1 85391266 85462796 - 200 100.0 0.28 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
353 MCOLN2 1097 uc001dkn.3 chr1 85391266 85462796 - 200 100.0 0.37 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
353 chr1 85458828 85459211 wgEncodeRegTfbsClusteredV3 RELA score:163, expCount:1, expNums:300, expScores:163, srow:181774
353 chr1 85458586 85460585 cpgShelf — values(x.gr)[overs$srow, ]:1969
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
353 cellmeth_recounts PrEC: 0, LNCaP: 0, DU145: 3
353 cellexp id=ENSG00000153898, name=MCOLN2, PrEC=417, str=371, LNCaP=372, str=545, DU145=135, str=124
353 tcgaexp gene=MCOLN2, entrez=255231, pos=chr1:85391266-85462796(-), B=71, L=267, M=262, H=219
353 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305