DMR 35542 chr20:30175901-30176300 (400bp)

DMR Stats
Positionchr20:30175901-30176300 (View on UCSC)
Width400bp
Genomic Contextintergenic
Nearest GenesHM13-AS1 (14834bp away)
ANODEV p-value1.6596797936e-09
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35542 chr20 30175906 30176230 wgEncodeRegDnaseClusteredV2 12 score:358, srow:712592
35542 chr20 30175248 30176129 wgEncodeRegTfbsClusteredV3 RBBP5 score:212, expCount:2, expNums:8,33, expScores:212,193, srow:2480922
35542 chr20 30175258 30176215 wgEncodeRegTfbsClusteredV3 POLR2A score:890, expCount:8, expNums:61,62,168,192,249,402,596,613, expScores:518,379,287,251,167,736,203,156, srow:2480923
35542 chr20 30175375 30176000 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:173, expCount:2, expNums:195,250, expScores:140,173, srow:2480926
35542 chr20 30175421 30175950 wgEncodeRegTfbsClusteredV3 TFAP2A score:202, expCount:1, expNums:369, expScores:202, srow:2480927
35542 chr20 30175433 30175948 wgEncodeRegTfbsClusteredV3 TFAP2C score:358, expCount:1, expNums:370, expScores:358, srow:2480928
35542 chr20 30175448 30175911 wgEncodeRegTfbsClusteredV3 MAZ score:299, expCount:2, expNums:396,512, expScores:299,181, srow:2480929
35542 chr20 30175485 30175904 wgEncodeRegTfbsClusteredV3 TAF1 score:333, expCount:1, expNums:199, expScores:333, srow:2480931
35542 chr20 30175495 30175961 wgEncodeRegTfbsClusteredV3 E2F1 score:1000, expCount:2, expNums:384,390, expScores:811,1000, srow:2480932
35542 chr20 30175552 30175927 wgEncodeRegTfbsClusteredV3 YY1 score:139, expCount:1, expNums:203, expScores:139, srow:2480934
35542 chr20 30175597 30175984 wgEncodeRegTfbsClusteredV3 MAX score:178, expCount:2, expNums:278,439, expScores:178,157, srow:2480936
35542 chr20 30175600 30175909 wgEncodeRegTfbsClusteredV3 NR3C1 score:199, expCount:1, expNums:58, expScores:199, srow:2480937
35542 chr20 30175696 30176505 wgEncodeRegTfbsClusteredV3 TCF7L2 score:245, expCount:1, expNums:581, expScores:166, srow:2480939
35542 chr20 30175858 30176227 wgEncodeRegTfbsClusteredV3 RCOR1 score:177, expCount:1, expNums:429, expScores:177, srow:2480940
35542 chr20 30175983 30176258 wgEncodeRegTfbsClusteredV3 MAFF score:187, expCount:1, expNums:436, expScores:187, srow:2480941
35542 chr20 30175996 30176251 wgEncodeRegTfbsClusteredV3 MAFK score:298, expCount:2, expNums:437,438, expScores:298,216, srow:2480942
35542 chr20 30176131 30176967 wgEncodeRegTfbsClusteredV3 TFAP2A score:297, expCount:1, expNums:369, expScores:132, srow:2480943
35542 chr20 30176177 30176918 wgEncodeRegTfbsClusteredV3 TFAP2C score:386, expCount:1, expNums:370, expScores:207, srow:2480944
35542 chr20 30175929 30175934 phastConsElements100way lod=13 score:247, srow:5314918
35542 chr20 30175458 30176058 cpgIsland CpG: 71 length:601, cpgNum:71, gcNum:450, perCpg:23.6, perGc:74.9, obsExp:0.86, srow:16509
35542 chr20 30176059 30178058 cpgShore — values(x.gr)[overs$srow, ]:29744
  • 21 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35542 cellmeth_recounts PrEC: 5, LNCaP: 512, DU145: 4
35542 cellmeth_diffreps_PrECvsLNCaP A=197, B=1490, Length=2000, Event=Up, log2FC=2.92, padj=0
35542 cellmeth_diffreps_LNCaPvsDU145 A=1598.22, B=125.35, Length=2040, Event=Down, log2FC=-3.67, padj=0
35542 tcgameth site:cg01338255, B=0.42, L=0.72, H=0.66
35542 tcgameth site:cg08340755, B=0.45, L=0.7, H=0.68