DMR 36509 chr1:1950201-1950550 (350bp)

DMR Stats
Positionchr1:1950201-1950550 (View on UCSC)
Width350bp
Genomic Contextpromoter
Nearest GenesGABRD (217bp away)
ANODEV p-value0.00324793532921
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 2.0 (22.22 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36509 chr1 1949846 1953995 wgEncodeRegDnaseClusteredV2 65 score:1000, srow:1106
36509 chr1 1949781 1950627 wgEncodeRegTfbsClusteredV3 EZH2 score:273, expCount:2, expNums:17,40, expScores:192,217, srow:5930
36509 chr1 1950412 1951479 cpgIsland CpG: 117 length:1068, cpgNum:117, gcNum:687, perCpg:21.9, perGc:64.3, obsExp:1.06, srow:151
36509 chr1 1948412 1950411 cpgShore — values(x.gr)[overs$srow, ]:240
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36509 cellmeth_recounts PrEC: 0, LNCaP: 592, DU145: 4
36509 cellmeth_diffreps_PrECvsLNCaP A=2, B=541, Length=1040, Event=Up, log2FC=8.08, padj=0
36509 cellmeth_diffreps_LNCaPvsDU145 A=578.35, B=7.48, Length=1020, Event=Down, log2FC=-6.27, padj=0
36509 tcgameth site:cg22817993, B=0.06, L=0.35, H=0.42
36509 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36509 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305