DMR 367 chr1:90117051-90117200 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:90117051-90117200 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | LRRC8C (0bp away) |
| ANODEV p-value | 0.012456863513 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 1.0 (11.11 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 367 | LRRC8C | 1139 | uc001dnl.4 | chr1 | 90098644 | 90185094 | + | 150 | 100.0 | 0.28 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 1 genes
Feature Overlaps
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 367 | cellmeth_recounts | PrEC: 0, LNCaP: 3, DU145: 18 |  |
| 367 | cellmeth_diffreps_PrECvsDU145 | A=0, B=13, Length=280, Event=Up, log2FC=Inf, padj=0.000941091010072773 |  |
| 367 | cellexp | id=ENSG00000171488, name=LRRC8C, PrEC=5835, str=5657, LNCaP=104, str=106, DU145=1875, str=2206 |  |
| 367 | cellexp | id=ENSG00000230735, name=RP11-413E1.4, PrEC=4, str=2, LNCaP=0, str=2, DU145=3, str=1 |  |
| 367 | cellexp | id=ENSG00000271949, name=RP11-302M6.4, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 367 | tcgaexp | gene=LRRC8C, entrez=84230, pos=chr1:90098644-90185094(+), B=613, L=432, M=508, H=642 |  |
| 367 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |