DMR 38447 chr7:216851-217050 (200bp)
| DMR Stats | |
|---|---|
| Position | chr7:216851-217050 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | FAM20C (0bp away) |
| ANODEV p-value | 0.000626048831504 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38447 | FAM20C | 26571 | uc003sip.3 | chr7 | 192969 | 300740 | + | 200 | 100.0 | 5.3 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 38447 | chr7 | 216641 | 216975 | wgEncodeRegDnaseClusteredV2 | 29 | score:667, srow:1068938 |
| 38447 | chr7 | 216986 | 217015 | wgEncodeRegDnaseClusteredV2 | 2 | score:277, srow:1068939 |
| 38447 | chr7 | 217046 | 217435 | wgEncodeRegDnaseClusteredV2 | 6 | score:371, srow:1068940 |
| 38447 | chr7 | 216310 | 218309 | cpgShore | — | values(x.gr)[overs$srow, ]:42872 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 38447 | cellmeth_recounts | PrEC: 15, LNCaP: 1, DU145: 3 |  |
| 38447 | cellmeth_diffreps_PrECvsLNCaP | A=74, B=2, Length=600, Event=Down, log2FC=-5.21, padj=0 |  |
| 38447 | cellmeth_diffreps_PrECvsDU145 | A=76, B=2, Length=700, Event=Down, log2FC=-5.25, padj=0 |  |
| 38447 | cellexp | id=ENSG00000177706, name=FAM20C, PrEC=1889, str=4484, LNCaP=78, str=29, DU145=1910, str=1427 |  |
| 38447 | tcgaexp | gene=FAM20C, entrez=56975, pos=chr7:192969-300740(+), B=2431, L=3211, M=2965, H=2717 |  |
| 38447 | pubmed | gene=FAM20C, G=40, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |