DMR 38449 chr7:232301-232450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr7:232301-232450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | FAM20C (0bp away) |
| ANODEV p-value | 0.00568932457012 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38449 | FAM20C | 26571 | uc003sip.3 | chr7 | 192969 | 300740 | + | 150 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 38449 | chr7 | 231540 | 233539 | cpgShore | — | values(x.gr)[overs$srow, ]:42878 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 38449 | cellmeth_recounts | PrEC: 10, LNCaP: 3, DU145: 1 |  |
| 38449 | cellmeth_diffreps_PrECvsDU145 | A=16, B=1, Length=200, Event=Down, log2FC=-4, padj=0.00241302194969176 |  |
| 38449 | cellexp | id=ENSG00000177706, name=FAM20C, PrEC=1889, str=4484, LNCaP=78, str=29, DU145=1910, str=1427 |  |
| 38449 | tcgaexp | gene=FAM20C, entrez=56975, pos=chr7:192969-300740(+), B=2431, L=3211, M=2965, H=2717 |  |