DMR 39023 chr8:80524901-80525150 (250bp)
| DMR Stats | |
|---|---|
| Position | chr8:80524901-80525150 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | STMN2 (0bp away) |
| ANODEV p-value | 2.6702009651e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39023 | STMN2 | 28636 | uc003ybj.3 | chr8 | 80523049 | 80578410 | + | 250 | 100.0 | 0.13 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 39023 | STMN2 | 28636 | uc010lzp.3 | chr8 | 80523049 | 80578410 | + | 250 | 100.0 | 0.13 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 39023 | STMN2 | 28636 | uc022awk.1 | chr8 | 80523049 | 80578410 | + | 250 | 100.0 | 6.6 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39023 | chr8 | 80524026 | 80525335 | wgEncodeRegDnaseClusteredV2 | 47 | score:1000, srow:1168613 |
| 39023 | chr8 | 80524099 | 80525301 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:896, expCount:8, expNums:3,15,17,19,21,36,40,43, expScores:175,669,190,94,379,340,282,524, srow:4015775 |
| 39023 | chr8 | 80524814 | 80525065 | wgEncodeRegTfbsClusteredV3 | USF1 | score:185, expCount:2, expNums:161,265, expScores:168,185, srow:4015777 |
| 39023 | chr8 | 80524871 | 80525140 | wgEncodeRegTfbsClusteredV3 | REST | score:206, expCount:1, expNums:257, expScores:206, srow:4015778 |
| 39023 | chr8 | 80525015 | 80525036 | tfbsConsSites | V$OLF1_01 | score:829, zScore:2.25, srow:5157084 |
| 39023 | chr8 | 80525108 | 80525129 | tfbsConsSites | V$MEF2_02 | score:777, zScore:1.7, srow:5157085 |
| 39023 | chr8 | 80525003 | 80525021 | phastConsElements100way | lod=42 | score:363, srow:8917038 |
| 39023 | chr8 | 80525080 | 80525083 | phastConsElements100way | lod=13 | score:247, srow:8917039 |
| 39023 | chr8 | 80523976 | 80525765 | cpgIsland | CpG: 127 | length:1790, cpgNum:127, gcNum:1112, perCpg:14.2, perGc:62.1, obsExp:0.74, srow:25799 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39023 | cellmeth_recounts | PrEC: 0, LNCaP: 5, DU145: 0 |  |
| 39023 | cellexp | id=ENSG00000104435, name=STMN2, PrEC=2, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 39023 | tcgameth | site:cg01691768, B=0.14, L=0.2, H=0.23 |  |
| 39023 | tcgaexp | gene=STMN2, entrez=11075, pos=chr8:80523049-80578410(+), B=100, L=89, M=99, H=235 |  |
| 39023 | pubmed | gene=STMN2, G=130, GP=1, GC=17, GM=3, GPM=0, GCM=1 |  |