DMR 42928 chr1:247579601-247579750 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:247579601-247579750 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | NLRP3 (0bp away) |
| ANODEV p-value | 0.0387799068659 |
| Frequencies | Benign: 5.0 (71.43%), Low: 4.0 (66.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42928 | NLRP3 | 2817 | uc001icr.3 | chr1 | 247579458 | 247612406 | + | 150 | 100.0 | 3.97 | 0 | 100.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 42928 | NLRP3 | 2817 | uc001ics.3 | chr1 | 247579458 | 247612406 | + | 150 | 100.0 | 0.08 | 0 | 100.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 42928 | chr1 | 247578821 | 247580315 | wgEncodeRegDnaseClusteredV2 | 62 | score:970, srow:119593 |
| 42928 | chr1 | 247579157 | 247579752 | wgEncodeRegTfbsClusteredV3 | NFIC | score:288, expCount:1, expNums:97, expScores:288, srow:436993 |
| 42928 | chr1 | 247579255 | 247579634 | wgEncodeRegTfbsClusteredV3 | TBP | score:269, expCount:1, expNums:317, expScores:269, srow:436995 |
| 42928 | chr1 | 247579257 | 247579626 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:487, expCount:1, expNums:109, expScores:487, srow:436996 |
| 42928 | chr1 | 247579332 | 247579893 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:204, expCount:2, expNums:86,292, expScores:204,169, srow:436997 |
| 42928 | chr1 | 247579340 | 247579636 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:740, expCount:3, expNums:275,577,599, expScores:540,740,145, srow:436998 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 42928 | cellmeth_recounts | PrEC: 1, LNCaP: 1, DU145: 0 |  |
| 42928 | cellexp | id=ENSG00000162711, name=NLRP3, PrEC=44, str=203, LNCaP=0, str=3, DU145=10, str=32 |  |
| 42928 | tcgameth | site:cg03505654, B=0.62, L=0.75, H=0.64 |  |
| 42928 | tcgaexp | gene=NLRP3, entrez=114548, pos=chr1:247579458-247612406(+), B=188, L=131, M=131, H=133 |  |