DMR 47389 chr1:982951-983100 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:982951-983100 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | AGRN (0bp away) |
| ANODEV p-value | 0.0400301321833 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47389 | AGRN | 37 | uc001ack.2 | chr1 | 955503 | 991499 | + | 150 | 100.0 | 7.39 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (1.33), E21 (76.67), I21 (22.67), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47389 | chr1 | 982885 | 983174 | wgEncodeRegTfbsClusteredV3 | HNF4G | score:143, expCount:1, expNums:183, expScores:143, srow:1440 |
| 47389 | chr1 | 982948 | 982957 | tfbsConsSites | V$AP4_Q6 | score:975, zScore:2.2, srow:409 |
| 47389 | chr1 | 983001 | 983021 | tfbsConsSites | V$STAT1_01 | score:827, zScore:2.82, srow:410 |
| 47389 | chr1 | 983001 | 983021 | tfbsConsSites | V$STAT3_01 | score:765, zScore:1.95, srow:411 |
| 47389 | chr1 | 983004 | 983032 | tfbsConsSites | V$MYOGNF1_01 | score:755, zScore:2.01, srow:412 |
| 47389 | chr1 | 983035 | 983054 | tfbsConsSites | V$YY1_02 | score:767, zScore:1.75, srow:413 |
| 47389 | chr1 | 983038 | 983051 | tfbsConsSites | V$MRF2_01 | score:828, zScore:1.68, srow:414 |
| 47389 | chr1 | 983049 | 983067 | tfbsConsSites | V$ER_Q6 | score:816, zScore:2.35, srow:415 |
| 47389 | chr1 | 983049 | 983069 | tfbsConsSites | V$PPARG_01 | score:788, zScore:2.77, srow:416 |
| 47389 | chr1 | 983053 | 983066 | tfbsConsSites | V$COUP_01 | score:851, zScore:1.81, srow:417 |
| 47389 | chr1 | 982950 | 982957 | phastConsElements100way | lod=62 | score:402, srow:3314 |
| 47389 | chr1 | 982959 | 982963 | phastConsElements100way | lod=33 | score:340, srow:3315 |
| 47389 | chr1 | 982965 | 982969 | phastConsElements100way | lod=40 | score:359, srow:3316 |
| 47389 | chr1 | 982971 | 982972 | phastConsElements100way | lod=17 | score:274, srow:3317 |
| 47389 | chr1 | 982974 | 982975 | phastConsElements100way | lod=24 | score:308, srow:3318 |
| 47389 | chr1 | 982977 | 982978 | phastConsElements100way | lod=24 | score:308, srow:3319 |
| 47389 | chr1 | 982983 | 982993 | phastConsElements100way | lod=81 | score:429, srow:3320 |
| 47389 | chr1 | 982996 | 982999 | phastConsElements100way | lod=40 | score:359, srow:3321 |
| 47389 | chr1 | 983001 | 983005 | phastConsElements100way | lod=28 | score:323, srow:3322 |
| 47389 | chr1 | 983007 | 983008 | phastConsElements100way | lod=18 | score:280, srow:3323 |
| 47389 | chr1 | 983011 | 983020 | phastConsElements100way | lod=74 | score:420, srow:3324 |
| 47389 | chr1 | 983025 | 983028 | phastConsElements100way | lod=32 | score:337, srow:3325 |
| 47389 | chr1 | 983034 | 983038 | phastConsElements100way | lod=29 | score:327, srow:3326 |
| 47389 | chr1 | 983040 | 983041 | phastConsElements100way | lod=21 | score:295, srow:3327 |
| 47389 | chr1 | 983046 | 983050 | phastConsElements100way | lod=51 | score:383, srow:3328 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47389 | cellmeth_recounts | PrEC: 123, LNCaP: 71, DU145: 1 |  |
| 47389 | cellmeth_diffreps_PrECvsLNCaP | A=240, B=83, Length=440, Event=Down, log2FC=-1.53, padj=0 |  |
| 47389 | cellmeth_diffreps_PrECvsDU145 | A=1318, B=26, Length=2100, Event=Down, log2FC=-5.66, padj=0 |  |
| 47389 | cellmeth_diffreps_LNCaPvsDU145 | A=5874.4, B=133.76, Length=7340, Event=Down, log2FC=-5.46, padj=0 |  |
| 47389 | cellexp | id=ENSG00000188157, name=AGRN, PrEC=67643, str=85402, LNCaP=9183, str=4748, DU145=54537, str=32788 |  |
| 47389 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47389 | tcgaexp | gene=AGRN, entrez=375790, pos=chr1:955503-991499(+), B=8608, L=11991, M=10872, H=10879 |  |
| 47389 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |