DMR 47390 chr1:1267601-1267800 (200bp)

DMR Stats
Positionchr1:1267601-1267800 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesTAS1R3 (0bp away)
ANODEV p-value0.0097490688439
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
47390 TAS1R3 60 uc010nyk.2 chr1 1266726 1269844 + 200 100.0 5.54 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (100), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
47390 chr1 1267406 1267855 wgEncodeRegDnaseClusteredV2 10 score:529, srow:555
47390 chr1 1264206 1269770 wgEncodeRegTfbsClusteredV3 POLR2A score:679, expCount:35, expNums:32,41,61,62,105,123,124,130,146,163,168,192,249,306,307,328,362,402,403,445,523,525,526,527,563,564,585,610,613,616,622,632,633,634,637, expScores:206,308,302,453,672,304,480,494,313,209,316,258,182,381,171,183,105,251,228,84,200,153,409,208,197,172,223,152,148,249,220,288,281,211,183, srow:2994
47390 chr1 1267544 1267843 wgEncodeRegTfbsClusteredV3 NR3C1 score:861, expCount:2, expNums:56,58, expScores:371,861, srow:3018
47390 chr1 1267640 1267823 wgEncodeRegTfbsClusteredV3 CTCF score:154, expCount:1, expNums:635, expScores:154, srow:3019
47390 chr1 1267786 1267803 tfbsConsSites V$AHR_01 score:791, zScore:2.13, srow:1114
47390 chr1 1267614 1267621 phastConsElements100way lod=36 score:348, srow:5414
47390 chr1 1267623 1267624 phastConsElements100way lod=30 score:330, srow:5415
47390 chr1 1267629 1267633 phastConsElements100way lod=37 score:351, srow:5416
47390 chr1 1267636 1267642 phastConsElements100way lod=25 score:312, srow:5417
47390 chr1 1267690 1267690 phastConsElements100way lod=13 score:247, srow:5418
47390 chr1 1267698 1267699 phastConsElements100way lod=15 score:262, srow:5419
47390 chr1 1267707 1267708 phastConsElements100way lod=19 score:285, srow:5420
47390 chr1 1267713 1267714 phastConsElements100way lod=20 score:290, srow:5421
47390 chr1 1267716 1267729 phastConsElements100way lod=55 score:390, srow:5422
47390 chr1 1267731 1267732 phastConsElements100way lod=22 score:300, srow:5423
47390 chr1 1267759 1267762 phastConsElements100way lod=17 score:274, srow:5424
47390 chr1 1267771 1267774 phastConsElements100way lod=15 score:262, srow:5425
47390 chr1 1267796 1267806 phastConsElements100way lod=84 score:432, srow:5426
47390 chr1 1267436 1268986 cpgIsland CpG: 116 length:1551, cpgNum:116, gcNum:1059, perCpg:15, perGc:68.3, obsExp:0.64, srow:82
  • 19 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
47390 cellmeth_recounts PrEC: 263, LNCaP: 77, DU145: 4
47390 cellmeth_diffreps_PrECvsLNCaP A=843, B=181, Length=1240, Event=Down, log2FC=-2.22, padj=0
47390 cellmeth_diffreps_PrECvsDU145 A=871, B=19, Length=1580, Event=Down, log2FC=-5.52, padj=0
47390 cellmeth_diffreps_LNCaPvsDU145 A=193.5, B=15.9, Length=1200, Event=Down, log2FC=-3.61, padj=0
47390 cellexp id=ENSG00000169962, name=TAS1R3, PrEC=45, str=50, LNCaP=88, str=115, DU145=218, str=174
47390 tcgameth site:cg08621441, B=0.57, L=0.52, H=0.54
47390 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
47390 tcgaexp gene=TAS1R3, entrez=83756, pos=chr1:1266726-1269844(+), B=16, L=9, M=11, H=16
47390 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305