DMR 47391 chr1:1458751-1458950 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:1458751-1458950 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | ATAD3A (0bp away) |
| ANODEV p-value | 0.0305649579212 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47391 | ATAD3A | 72 | uc001afz.2 | chr1 | 1447523 | 1470067 | + | 200 | 100.0 | 7.32 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (70), E9 (28.5), I9 (2), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 47391 | ATAD3A | 72 | uc001aga.2 | chr1 | 1447523 | 1470067 | + | 200 | 100.0 | 16.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (70), E9 (28.5), I9 (2), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 47391 | ATAD3A | 72 | uc001agb.2 | chr1 | 1447910 | 1470067 | + | 200 | 100.0 | 10.21 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (70), E9 (28.5), I9 (2), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47391 | chr1 | 1458924 | 1458924 | cosmic | COSM1333627 | srow:949 |
| 47391 | chr1 | 1458925 | 1458925 | cosmic | COSM462861 | srow:950 |
| 47391 | chr1 | 1458888 | 1458904 | phastConsElements100way | lod=103 | score:452, srow:6927 |
| 47391 | chr1 | 1458907 | 1458925 | phastConsElements100way | lod=115 | score:463, srow:6928 |
| 47391 | chr1 | 1458928 | 1458934 | phastConsElements100way | lod=82 | score:430, srow:6929 |
| 47391 | chr1 | 1458936 | 1458937 | phastConsElements100way | lod=30 | score:330, srow:6930 |
| 47391 | chr1 | 1458939 | 1458953 | phastConsElements100way | lod=129 | score:475, srow:6931 |
| 47391 | chr1 | 1457955 | 1459029 | cpgIsland | CpG: 77 | length:1075, cpgNum:77, gcNum:721, perCpg:14.3, perGc:67.1, obsExp:0.64, srow:107 |
- 8 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47391 | cellmeth_recounts | PrEC: 164, LNCaP: 35, DU145: 13 |  |
| 47391 | cellmeth_diffreps_PrECvsLNCaP | A=672, B=81, Length=2120, Event=Down, log2FC=-3.05, padj=0 |  |
| 47391 | cellmeth_diffreps_PrECvsDU145 | A=672, B=26, Length=2080, Event=Down, log2FC=-4.69, padj=0 |  |
| 47391 | cellexp | id=ENSG00000197785, name=ATAD3A, PrEC=3004, str=1452, LNCaP=2110, str=2182, DU145=1267, str=1711 |  |
| 47391 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47391 | tcgaexp | gene=ATAD3A, entrez=55210, pos=chr1:1447523-1470067(+), B=1323, L=2065, M=1959, H=1912 |  |
| 47391 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |