DMR 47392 chr1:1871901-1872100 (200bp)

DMR Stats
Positionchr1:1871901-1872100 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesC1orf222 (12532bp away)
ANODEV p-value0.00361344321992
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
47392 chr1 1871706 1871955 wgEncodeRegDnaseClusteredV2 2 score:252, srow:1040
47392 chr1 1870716 1872715 cpgShelf — values(x.gr)[overs$srow, ]:131
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
47392 cellmeth_recounts PrEC: 78, LNCaP: 8, DU145: 5
47392 cellmeth_diffreps_PrECvsLNCaP A=127, B=6, Length=560, Event=Down, log2FC=-4.4, padj=0
47392 cellmeth_diffreps_PrECvsDU145 A=127, B=4, Length=580, Event=Down, log2FC=-4.99, padj=0
47392 cellexp id=ENSG00000142609, name=C1orf222, PrEC=0, str=0, LNCaP=13, str=6, DU145=23, str=8
47392 tcgameth site:cg02367828, B=0.92, L=0.9, H=0.84
47392 tcgameth site:cg24315049, B=0.96, L=0.96, H=0.94
47392 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
47392 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305