DMR 47397 chr1:2263151-2263300 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:2263151-2263300 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | MORN1 (0bp away) |
| ANODEV p-value | 0.0162893066061 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47397 | MORN1 | 99 | uc001ajb.1 | chr1 | 2252696 | 2322993 | - | 150 | 100.0 | 63.21 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (100), E13 (0), I13 (0), E14 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47397 | chr1 | 2263066 | 2263250 | wgEncodeRegDnaseClusteredV2 | 2 | score:345, srow:1463 |
| 47397 | chr1 | 2263091 | 2263616 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:199, expCount:1, expNums:215, expScores:149, srow:7205 |
| 47397 | chr1 | 2261327 | 2264007 | cpgShelf | — | values(x.gr)[overs$srow, ]:175 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47397 | cellmeth_recounts | PrEC: 102, LNCaP: 14, DU145: 4 |  |
| 47397 | cellmeth_diffreps_PrECvsLNCaP | A=226, B=14, Length=680, Event=Down, log2FC=-4.01, padj=0 |  |
| 47397 | cellmeth_diffreps_PrECvsDU145 | A=226, B=11, Length=680, Event=Down, log2FC=-4.36, padj=0 |  |
| 47397 | cellmeth_diffreps_LNCaPvsDU145 | A=11.76, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00547907730955432 |  |
| 47397 | cellexp | id=ENSG00000116151, name=MORN1, PrEC=59, str=110, LNCaP=366, str=166, DU145=90, str=55 |  |
| 47397 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47397 | tcgaexp | gene=MORN1, entrez=79906, pos=chr1:2252696-2322993(-), B=219, L=217, M=237, H=224 |  |
| 47397 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |