DMR 47399 chr1:2273551-2273700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:2273551-2273700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | MORN1 (0bp away) |
| ANODEV p-value | 0.00366294344028 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47399 | MORN1 | 99 | uc001ajb.1 | chr1 | 2252696 | 2322993 | - | 150 | 100.0 | 2.45 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 47399 | MORN1 | 99 | uc009vld.3 | chr1 | 2263565 | 2322993 | - | 150 | 100.0 | 3.71 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47399 | chr1 | 2273466 | 2273650 | wgEncodeRegDnaseClusteredV2 | 2 | score:445, srow:1471 |
| 47399 | chr1 | 2273549 | 2273557 | tfbsConsSites | V$EVI1_06 | score:901, zScore:2.4, srow:3533 |
| 47399 | chr1 | 2273549 | 2273561 | tfbsConsSites | V$GATA1_04 | score:906, zScore:2.19, srow:3534 |
| 47399 | chr1 | 2273558 | 2273574 | tfbsConsSites | V$RFX1_01 | score:847, zScore:2.23, srow:3535 |
| 47399 | chr1 | 2273618 | 2273636 | tfbsConsSites | V$ER_Q6 | score:796, zScore:2, srow:3536 |
| 47399 | chr1 | 2273642 | 2273659 | tfbsConsSites | V$CART1_01 | score:811, zScore:2.21, srow:3537 |
| 47399 | chr1 | 2273643 | 2273652 | tfbsConsSites | V$CREL_01 | score:894, zScore:1.76, srow:3538 |
| 47399 | chr1 | 2273643 | 2273652 | tfbsConsSites | V$NFKAPPAB65_01 | score:899, zScore:1.81, srow:3539 |
| 47399 | chr1 | 2273652 | 2273661 | tfbsConsSites | V$LHX3_01 | score:926, zScore:2.16, srow:3540 |
| 47399 | chr1 | 2273672 | 2273687 | tfbsConsSites | V$S8_01 | score:886, zScore:2.24, srow:3541 |
| 47399 | chr1 | 2273688 | 2273702 | tfbsConsSites | V$CDPCR3_01 | score:797, zScore:1.88, srow:3542 |
| 47399 | chr1 | 2273691 | 2273703 | tfbsConsSites | V$AREB6_01 | score:910, zScore:2.17, srow:3543 |
| 47399 | chr1 | 2273540 | 2273561 | phastConsElements100way | lod=114 | score:462, srow:10195 |
| 47399 | chr1 | 2273594 | 2273599 | phastConsElements100way | lod=26 | score:316, srow:10196 |
| 47399 | chr1 | 2273610 | 2273613 | phastConsElements100way | lod=16 | score:268, srow:10197 |
| 47399 | chr1 | 2273621 | 2273708 | phastConsElements100way | lod=403 | score:587, srow:10198 |
| 47399 | chr1 | 2272359 | 2274358 | cpgShelf | — | values(x.gr)[overs$srow, ]:177 |
- 17 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47399 | cellmeth_recounts | PrEC: 30, LNCaP: 4, DU145: 8 |  |
| 47399 | cellmeth_diffreps_PrECvsLNCaP | A=343, B=42, Length=1180, Event=Down, log2FC=-3.03, padj=0 |  |
| 47399 | cellmeth_diffreps_PrECvsDU145 | A=343, B=26, Length=1200, Event=Down, log2FC=-3.72, padj=0 |  |
| 47399 | cellexp | id=ENSG00000116151, name=MORN1, PrEC=59, str=110, LNCaP=366, str=166, DU145=90, str=55 |  |
| 47399 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47399 | tcgaexp | gene=MORN1, entrez=79906, pos=chr1:2252696-2322993(-), B=219, L=217, M=237, H=224 |  |
| 47399 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |