DMR 47400 chr1:2587301-2587450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:2587301-2587450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | TTC34 (0bp away) |
| ANODEV p-value | 0.00357572925552 |
| Frequencies | Benign: 2.0 (28.57%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47400 | TTC34 | 113 | uc021oey.1 | chr1 | 2572807 | 2706230 | - | 150 | 100.0 | 4.95 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47400 | chr1 | 2586926 | 2587475 | wgEncodeRegDnaseClusteredV2 | 59 | score:950, srow:1815 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47400 | cellmeth_recounts | PrEC: 3, LNCaP: 0, DU145: 4 |  |
| 47400 | cellexp | id=ENSG00000215912, name=TTC34, PrEC=8, str=16, LNCaP=89, str=18, DU145=36, str=25 |  |
| 47400 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47400 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |