DMR 47402 chr1:2716951-2717100 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:2716951-2717100 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intergenic |
| Nearest Genes | TTC34 (10720bp away) |
| ANODEV p-value | 0.0385696797418 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 47402 | chr1 | 2716866 | 2717095 | wgEncodeRegDnaseClusteredV2 | 3 | score:202, srow:1860 |
| 47402 | chr1 | 2717036 | 2717047 | tfbsConsSites | V$CREB_02 | score:881, zScore:2.19, srow:4554 |
| 47402 | chr1 | 2717085 | 2717095 | tfbsConsSites | V$SREBP1_02 | score:839, zScore:2.12, srow:4555 |
| 47402 | chr1 | 2717087 | 2717095 | tfbsConsSites | V$ZIC3_01 | score:915, zScore:1.74, srow:4556 |
| 47402 | chr1 | 2717093 | 2717111 | tfbsConsSites | V$HNF4_01 | score:810, zScore:1.72, srow:4557 |
| 47402 | chr1 | 2716955 | 2716963 | phastConsElements100way | lod=55 | score:390, srow:11950 |
| 47402 | chr1 | 2716965 | 2716966 | phastConsElements100way | lod=17 | score:274, srow:11951 |
| 47402 | chr1 | 2716968 | 2716973 | phastConsElements100way | lod=36 | score:348, srow:11952 |
| 47402 | chr1 | 2716977 | 2716984 | phastConsElements100way | lod=43 | score:366, srow:11953 |
| 47402 | chr1 | 2717004 | 2717011 | phastConsElements100way | lod=35 | score:345, srow:11954 |
| 47402 | chr1 | 2717019 | 2717023 | phastConsElements100way | lod=20 | score:290, srow:11955 |
| 47402 | chr1 | 2717029 | 2717032 | phastConsElements100way | lod=16 | score:268, srow:11956 |
| 47402 | chr1 | 2717034 | 2717035 | phastConsElements100way | lod=17 | score:274, srow:11957 |
| 47402 | chr1 | 2717046 | 2717047 | phastConsElements100way | lod=14 | score:255, srow:11958 |
| 47402 | chr1 | 2717055 | 2717061 | phastConsElements100way | lod=28 | score:323, srow:11959 |
| 47402 | chr1 | 2717064 | 2717068 | phastConsElements100way | lod=26 | score:316, srow:11960 |
| 47402 | chr1 | 2717072 | 2717077 | phastConsElements100way | lod=25 | score:312, srow:11961 |
| 47402 | chr1 | 2717088 | 2717095 | phastConsElements100way | lod=45 | score:370, srow:11962 |
| 47402 | chr1 | 2717097 | 2717099 | phastConsElements100way | lod=27 | score:320, srow:11963 |
| 47402 | chr1 | 2716742 | 2717233 | cpgIsland | CpG: 41 | length:492, cpgNum:41, gcNum:353, perCpg:16.7, perGc:71.7, obsExp:0.65, srow:222 |
- 20 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 47402 | cellmeth_recounts | PrEC: 149, LNCaP: 3, DU145: 8 |  |
| 47402 | cellmeth_diffreps_PrECvsLNCaP | A=370, B=2, Length=920, Event=Down, log2FC=-7.53, padj=0 |  |
| 47402 | cellmeth_diffreps_PrECvsDU145 | A=369, B=12, Length=840, Event=Down, log2FC=-4.94, padj=0 |  |
| 47402 | cellexp | id=ENSG00000215912, name=TTC34, PrEC=8, str=16, LNCaP=89, str=18, DU145=36, str=25 |  |
| 47402 | tcgameth | site:cg09475276, B=0.75, L=0.74, H=0.7 |  |
| 47402 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 47402 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |