DMR 47411 chr1:2845051-2845200 (150bp)

DMR Stats
Positionchr1:2845051-2845200 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesACTRT2 (92845bp away)
ANODEV p-value0.00413095244486
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
47411 chr1 2844846 2845215 wgEncodeRegDnaseClusteredV2 4 score:185, srow:1985
47411 chr1 2845071 2845077 tfbsConsSites V$NKX25_01 score:948, zScore:1.73, srow:4866
47411 chr1 2845057 2847056 cpgShore — values(x.gr)[overs$srow, ]:366
47411 chr1 2843057 2845056 cpgShelf — values(x.gr)[overs$srow, ]:224
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
47411 cellmeth_recounts PrEC: 53, LNCaP: 1, DU145: 1
47411 cellmeth_diffreps_PrECvsLNCaP A=169, B=1, Length=960, Event=Down, log2FC=-7.4, padj=0
47411 cellmeth_diffreps_PrECvsDU145 A=169, B=4, Length=960, Event=Down, log2FC=-5.4, padj=0
47411 tcgameth site:cg00779565, B=0.69, L=0.6, H=0.55
47411 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
47411 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305