DMR 47412 chr1:2850801-2850950 (150bp)

DMR Stats
Positionchr1:2850801-2850950 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesACTRT2 (87095bp away)
ANODEV p-value0.00786936502447
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
47412 chr1 2850926 2851235 wgEncodeRegDnaseClusteredV2 5 score:250, srow:1995
47412 chr1 2850666 2850873 cpgIsland CpG: 16 length:208, cpgNum:16, gcNum:122, perCpg:15.4, perGc:58.7, obsExp:0.9, srow:227
47412 chr1 2850874 2852873 cpgShore — values(x.gr)[overs$srow, ]:368
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
47412 cellmeth_recounts PrEC: 57, LNCaP: 0, DU145: 6
47412 cellmeth_diffreps_PrECvsLNCaP A=208, B=0, Length=1080, Event=Down, log2FC=-Inf, padj=0
47412 cellmeth_diffreps_PrECvsDU145 A=208, B=12, Length=980, Event=Down, log2FC=-4.12, padj=0
47412 tcgameth site:cg21409829, B=0.9, L=0.83, H=0.76
47412 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
47412 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305