DMR Stats | |
---|---|
Position | chr1:171501551-171501750 (View on UCSC) |
Width | 200bp |
Genomic Context | 3' end |
Nearest Genes | PRRC2C (0bp away) |
ANODEV p-value | 0.00769003914008 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
517 | PRRC2C | 2148 | uc001ghr.1 | chr1 | 171454666 | 171502100 | + | 200 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100) | 100.0 |
517 | PRRC2C | 2148 | uc010pmg.2 | chr1 | 171454666 | 171562650 | + | 200 | 100.0 | 0.13 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
517 | chr1 | 171501576 | 171501589 | tfbsConsSites | V$FOXO1_02 | score:856, zScore:2.58, srow:353900 |
517 | chr1 | 171501576 | 171501589 | tfbsConsSites | V$FOXO3_01 | score:870, zScore:2.47, srow:353901 |
517 | chr1 | 171501576 | 171501589 | tfbsConsSites | V$FOXO4_02 | score:899, zScore:3.14, srow:353902 |
517 | chr1 | 171501607 | 171501622 | tfbsConsSites | V$ARNT_01 | score:870, zScore:2.25, srow:353903 |
517 | chr1 | 171501586 | 171501586 | cosmic | COSM899532 | srow:85829 |
517 | chr1 | 171501586 | 171501586 | cosmic | COSM530552 | srow:85830 |
517 | chr1 | 171501586 | 171501586 | cosmic | COSM899533 | srow:85831 |
517 | chr1 | 171501586 | 171501586 | cosmic | COSM530553 | srow:85832 |
517 | chr1 | 171501621 | 171501621 | cosmic | COSM171956 | srow:85833 |
517 | chr1 | 171501648 | 171501648 | cosmic | COSM899534 | srow:85834 |
517 | chr1 | 171501648 | 171501648 | cosmic | COSM899535 | srow:85835 |
517 | chr1 | 171501678 | 171501678 | cosmic | COSM207930 | srow:85836 |
517 | chr1 | 171501720 | 171501721 | cosmic | COSM1600371 | srow:85837 |
517 | chr1 | 171501720 | 171501721 | cosmic | COSM1600372 | srow:85838 |
517 | chr1 | 171501728 | 171501728 | cosmic | COSM1726578 | srow:85839 |
517 | chr1 | 171501728 | 171501728 | cosmic | COSM1726577 | srow:85840 |
517 | chr1 | 171501548 | 171501564 | phastConsElements100way | lod=165 | score:499, srow:612891 |
517 | chr1 | 171501566 | 171501597 | phastConsElements100way | lod=263 | score:545, srow:612892 |
517 | chr1 | 171501599 | 171501600 | phastConsElements100way | lod=31 | score:333, srow:612893 |
517 | chr1 | 171501602 | 171501603 | phastConsElements100way | lod=30 | score:330, srow:612894 |
517 | chr1 | 171501605 | 171501606 | phastConsElements100way | lod=36 | score:348, srow:612895 |
517 | chr1 | 171501608 | 171501621 | phastConsElements100way | lod=145 | score:486, srow:612896 |
517 | chr1 | 171501623 | 171501645 | phastConsElements100way | lod=221 | score:528, srow:612897 |
517 | chr1 | 171501647 | 171501672 | phastConsElements100way | lod=285 | score:553, srow:612898 |
517 | chr1 | 171501674 | 171501678 | phastConsElements100way | lod=76 | score:422, srow:612899 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
517 | cellmeth_recounts | PrEC: 10, LNCaP: 3, DU145: 0 | |
517 | cellmeth_diffreps_PrECvsDU145 | A=15, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000269565104641442 | |
517 | cellexp | id=ENSG00000117523, name=PRRC2C, PrEC=21695, str=22470, LNCaP=9409, str=15608, DU145=8580, str=10156 | |
517 | tcgaexp | gene=PRRC2C, entrez=23215, pos=chr1:171454666-171562650(+), B=9833, L=8537, M=9043, H=9731 | |
517 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |