DMR 70 chr1:6266601-6266750 (150bp)

DMR Stats
Positionchr1:6266601-6266750 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesRNF207 (0bp away)
ANODEV p-value0.00401870342221
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
70 RNF207 144 uc001amf.1 chr1 6266189 6268366 + 150 100.0 0.18 0 58.67 E1 (0), I1 (0), E2 (100), I2 (0), E3 (0) 0.0
70 RNF207 144 uc001amg.3 chr1 6266189 6281359 + 150 100.0 0.24 0 58.67 E1 (0), I1 (0), E2 (100), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
70 chr1 6266526 6267655 wgEncodeRegDnaseClusteredV2 36 score:461, srow:4801
70 chr1 6264811 6266612 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:51, expNums:32,61,62,78,104,105,123,124,130,131,163,168,191,192,206,228,229,249,256,283,306,307,326,328,330,332,334,336,338,340,362,366,402,445,446,521,522,523,524,525,563,564,596,599,602,613,616,619,622,632,633, expScores:217,242,356,324,750,890,343,407,278,600,371,933,312,276,194,232,1000,166,265,150,855,206,678,578,187,1000,175,1000,778,631,236,124,780,213,479,227,232,291,192,277,243,337,204,362,216,280,303,103,446,546,414, srow:13098
70 chr1 6266028 6266826 wgEncodeRegTfbsClusteredV3 CTBP2 score:187, expCount:1, expNums:348, expScores:136, srow:13162
70 chr1 6266054 6266803 wgEncodeRegTfbsClusteredV3 CCNT2 score:199, expCount:1, expNums:476, expScores:115, srow:13166
70 chr1 6266241 6266716 wgEncodeRegTfbsClusteredV3 STAT1 score:199, expCount:1, expNums:410, expScores:199, srow:13171
70 chr1 6266690 6266709 tfbsConsSites V$ARNT_02 score:793, zScore:1.99, srow:9698
70 chr1 6266731 6266749 tfbsConsSites V$AHRARNT_02 score:792, zScore:2.07, srow:9699
70 chr1 6266734 6266752 tfbsConsSites V$PAX2_01 score:775, zScore:1.8, srow:9700
70 chr1 6266740 6266751 tfbsConsSites V$EGR1_01 score:875, zScore:2.44, srow:9701
70 chr1 6266740 6266751 tfbsConsSites V$EGR2_01 score:881, zScore:2.52, srow:9702
70 chr1 6266740 6266751 tfbsConsSites V$EGR3_01 score:866, zScore:2.35, srow:9703
70 chr1 6266741 6266758 tfbsConsSites V$MIF1_01 score:775, zScore:1.89, srow:9704
70 chr1 6266742 6266758 tfbsConsSites V$RFX1_01 score:840, zScore:2.1, srow:9705
70 chr1 6266722 6266722 cosmic COSM535738 srow:3198
70 chr1 6266735 6266735 cosmic COSM1320962 srow:3199
70 chr1 6266602 6266606 phastConsElements100way lod=53 score:387, srow:21565
70 chr1 6266608 6266613 phastConsElements100way lod=58 score:395, srow:21566
70 chr1 6266621 6266629 phastConsElements100way lod=57 score:394, srow:21567
70 chr1 6266635 6266642 phastConsElements100way lod=63 score:404, srow:21568
70 chr1 6266650 6266660 phastConsElements100way lod=75 score:421, srow:21569
70 chr1 6266662 6266696 phastConsElements100way lod=228 score:531, srow:21570
70 chr1 6266698 6266699 phastConsElements100way lod=22 score:300, srow:21571
70 chr1 6266701 6266729 phastConsElements100way lod=284 score:553, srow:21572
70 chr1 6266731 6266744 phastConsElements100way lod=128 score:474, srow:21573
70 chr1 6266746 6266753 phastConsElements100way lod=71 score:415, srow:21574
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  • 25 of 26 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
70 cellmeth_recounts PrEC: 0, LNCaP: 11, DU145: 0
70 cellexp id=ENSG00000116251, name=RPL22, PrEC=7011, str=3775, LNCaP=9345, str=7785, DU145=3808, str=5248
70 cellexp id=ENSG00000158286, name=RNF207, PrEC=772, str=1489, LNCaP=542, str=266, DU145=993, str=933
70 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
70 tcgaexp gene=RNF207, entrez=388591, pos=chr1:6266189-6281359(+), B=476, L=319, M=304, H=325
70 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305