DMR 721 chr2:1233801-1234000 (200bp)
| DMR Stats | |
|---|---|
| Position | chr2:1233801-1234000 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | SNTG2 (0bp away) |
| ANODEV p-value | 0.0129185300819 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 721 | SNTG2 | 15968 | uc002qwq.3 | chr2 | 946554 | 1371384 | + | 200 | 100.0 | 0.88 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 721 | SNTG2 | 15968 | uc010ewi.3 | chr2 | 946554 | 1371384 | + | 200 | 100.0 | 2.97 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 2 geness
Feature Overlaps
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 721 | cellmeth_recounts | PrEC: 3, LNCaP: 5, DU145: 12 |  |
| 721 | cellmeth_diffreps_PrECvsLNCaP | A=76, B=12, Length=400, Event=Down, log2FC=-2.66, padj=5.6278104440204e-11 |  |
| 721 | cellmeth_diffreps_PrECvsDU145 | A=95, B=14, Length=620, Event=Down, log2FC=-2.76, padj=3.65648343852673e-14 |  |
| 721 | cellexp | id=ENSG00000172554, name=SNTG2, PrEC=0, str=0, LNCaP=10, str=12, DU145=54, str=25 |  |
| 721 | tcgaexp | gene=SNTG2, entrez=54221, pos=chr2:946554-1371384(+), B=14, L=7, M=11, H=10 |  |