DMR 810 chr2:11053501-11053750 (250bp)
| DMR Stats | |
|---|---|
| Position | chr2:11053501-11053750 (View on UCSC) |
| Width | 250bp |
| Genomic Context | 3' end |
| Nearest Genes | KCNF1 (0bp away) |
| ANODEV p-value | 0.00639206896184 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 810 | KCNF1 | 16020 | uc002rax.3 | chr2 | 11052063 | 11054351 | + | 250 | 100.0 | 0.08 | 0 | 0.0 | E1 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 810 | chr2 | 11053281 | 11053615 | wgEncodeRegDnaseClusteredV2 | 6 | score:174, srow:599807 |
| 810 | chr2 | 11053706 | 11054330 | wgEncodeRegDnaseClusteredV2 | 15 | score:312, srow:599808 |
| 810 | chr2 | 11053507 | 11053527 | tfbsConsSites | V$STAT1_01 | score:784, zScore:2.13, srow:2534006 |
| 810 | chr2 | 11053510 | 11053524 | tfbsConsSites | V$STAT5A_01 | score:854, zScore:1.68, srow:2534007 |
| 810 | chr2 | 11053532 | 11053547 | tfbsConsSites | V$FREAC3_01 | score:811, zScore:1.89, srow:2534008 |
| 810 | chr2 | 11053547 | 11053553 | tfbsConsSites | V$AP2REP_01 | score:968, zScore:1.83, srow:2534009 |
| 810 | chr2 | 11053630 | 11053653 | tfbsConsSites | V$COMP1_01 | score:843, zScore:2.89, srow:2534010 |
| 810 | chr2 | 11053659 | 11053673 | tfbsConsSites | V$CDPCR3_01 | score:796, zScore:1.86, srow:2534011 |
| 810 | chr2 | 11053713 | 11053722 | tfbsConsSites | V$GATA1_01 | score:938, zScore:1.7, srow:2534012 |
| 810 | chr2 | 11053727 | 11053744 | tfbsConsSites | V$CEBP_C | score:831, zScore:2.23, srow:2534013 |
| 810 | chr2 | 11053728 | 11053741 | tfbsConsSites | V$CEBPB_01 | score:881, zScore:1.65, srow:2534014 |
| 810 | chr2 | 11053730 | 11053740 | tfbsConsSites | V$SREBP1_02 | score:824, zScore:1.88, srow:2534015 |
| 810 | chr2 | 11053747 | 11053767 | tfbsConsSites | V$PPARG_01 | score:740, zScore:1.92, srow:2534016 |
| 810 | chr2 | 11053501 | 11053501 | cosmic | COSM1662360 | srow:631324 |
| 810 | chr2 | 11053551 | 11053551 | cosmic | COSM440977 | srow:631325 |
| 810 | chr2 | 11053628 | 11053628 | cosmic | COSM1005346 | srow:631326 |
| 810 | chr2 | 11053646 | 11053646 | cosmic | COSM257203 | srow:631327 |
| 810 | chr2 | 11053665 | 11053665 | cosmic | COSM1481847 | srow:631328 |
| 810 | chr2 | 11053705 | 11053705 | cosmic | COSM1005347 | srow:631329 |
| 810 | chr2 | 11053710 | 11053710 | cosmic | COSM1005348 | srow:631330 |
| 810 | chr2 | 11053714 | 11053714 | cosmic | COSM312165 | srow:631331 |
| 810 | chr2 | 11053721 | 11053721 | cosmic | COSM1005349 | srow:631332 |
| 810 | chr2 | 11053750 | 11053750 | cosmic | COSM714780 | srow:631333 |
| 810 | chr2 | 11053501 | 11053547 | phastConsElements100way | lod=601 | score:627, srow:4391688 |
| 810 | chr2 | 11053549 | 11053568 | phastConsElements100way | lod=236 | score:534, srow:4391689 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 810 | cellmeth_recounts | PrEC: 101, LNCaP: 150, DU145: 18 |  |
| 810 | cellmeth_diffreps_PrECvsLNCaP | A=144, B=67, Length=380, Event=Down, log2FC=-1.1, padj=4.78785853121067e-06 |  |
| 810 | cellmeth_diffreps_PrECvsDU145 | A=1006, B=71, Length=1300, Event=Down, log2FC=-3.82, padj=0 |  |
| 810 | cellmeth_diffreps_LNCaPvsDU145 | A=1217.64, B=72.03, Length=1720, Event=Down, log2FC=-4.08, padj=0 |  |
| 810 | cellexp | id=ENSG00000162975, name=KCNF1, PrEC=7, str=28, LNCaP=4, str=0, DU145=195, str=105 |  |
| 810 | tcgameth | site:cg01416043, B=0.97, L=0.95, H=0.89 |  |
| 810 | tcgaexp | gene=KCNF1, entrez=3754, pos=chr2:11052063-11054351(+), B=56, L=29, M=14, H=12 |  |