DMR 30243 chr9:21967201-21969300 (2100bp)

DMR Stats
Positionchr9:21967201-21969300 (View on UCSC)
Width2100bp
Genomic Contextpromoter
Nearest GenesMTAP, CDKN2A, C9orf53 (0bp away)
ANODEV p-value1.6596797936e-09
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
30243 MTAP 29230 uc003zpi.1 chr9 21802635 22029593 + 2100 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0) 0.0
30243 CDKN2A 29232 uc003zpj.3 chr9 21967751 21974826 - 1550 73.81 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (50.48), E3 (23.38) 73.81
30243 CDKN2A 29232 uc003zpk.3 chr9 21967751 21975132 - 1550 73.81 0.11 0 0.0 E1 (0), I1 (0), E2 (0), I2 (50.48), E3 (23.38) 73.81
30243 CDKN2A 29233 uc003zpl.3 chr9 21967751 21994490 - 1550 73.81 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (50.48), E3 (23.38) 73.81
30243 CDKN2A 29232 uc010miu.3 chr9 21967751 21975132 - 1550 73.81 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (25.29), E3 (9.38), I3 (15.86), E4 (23.38) 73.81
30243 C9orf53 29231 uc011lnm.3 chr9 21967138 21967753 + 553 26.33 0.09 0 20.81 E1 (26.33) 73.95
  • 6 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30243 chr9 21968242 21968242 cosmic COSM99937 srow:1185120
30243 chr9 21968243 21968243 cosmic COSM13518 srow:1185121
30243 chr9 21968243 21968243 cosmic COSM14268 srow:1185122
30243 chr9 21968243 21968243 cosmic COSM13519 srow:1185123
30243 chr9 21968248 21968248 cosmic COSM27145 srow:1185124
30243 chr9 21968269 21968273 phastConsElements100way lod=21 score:295, srow:9193448
30243 chr9 21969065 21969075 phastConsElements100way lod=18 score:280, srow:9193449
30243 chr9 21968359 21968728 cpgIsland CpG: 32 length:370, cpgNum:32, gcNum:236, perCpg:17.3, perGc:63.8, obsExp:0.86, srow:26388
30243 chr9 21965748 21968358 cpgShore — values(x.gr)[overs$srow, ]:47763
30243 chr9 21968729 21970913 cpgShore — values(x.gr)[overs$srow, ]:47764

Omics Overlaps

Dmrid Omic Set Data Plot
30243 cellmeth_recounts PrEC: 5, LNCaP: 126, DU145: 90
30243 cellmeth_diffreps_PrECvsLNCaP A=0, B=24, Length=400, Event=Up, log2FC=Inf, padj=5.28495671886566e-07
30243 cellmeth_diffreps_PrECvsLNCaP A=6, B=56, Length=560, Event=Up, log2FC=3.22, padj=7.88386571396812e-10
30243 cellmeth_diffreps_PrECvsDU145 A=0, B=27, Length=420, Event=Up, log2FC=Inf, padj=9.26891362789191e-08
30243 cellmeth_diffreps_PrECvsDU145 A=0, B=12, Length=220, Event=Up, log2FC=Inf, padj=0.00174045876043459
30243 cellmeth_diffreps_LNCaPvsDU145 A=39.55, B=6.55, Length=360, Event=Down, log2FC=-2.59, padj=6.66204993264374e-05
30243 cellexp id=ENSG00000147889, name=CDKN2A, PrEC=1410, str=2877, LNCaP=1434, str=781, DU145=14955, str=7733
30243 cellexp id=ENSG00000224854, name=C9orf53, PrEC=2, str=2, LNCaP=2, str=2, DU145=23, str=27
30243 cellexp id=ENSG00000264545, name=RP11-145E5.5, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
30243 tcgaexp gene=CDKN2A, entrez=1029, pos=chr9:21967751-21994490(-), B=78, L=114, M=130, H=114
30243 tcgaexp gene=MTAP, entrez=4507, pos=chr9:21802635-22029593(+), B=1721, L=1710, M=1618, H=1582
30243 tcgaexp gene=C9orf53, entrez=51198, pos=chr9:21967138-21967753(+), B=0, L=0, M=0, H=0