DMR 32216 chr12:65220201-65220500 (300bp)
| DMR Stats | |
|---|---|
| Position | chr12:65220201-65220500 (View on UCSC) |
| Width | 300bp |
| Genomic Context | intron |
| Nearest Genes | TBC1D30 (0bp away) |
| ANODEV p-value | 9.56345605882e-10 |
| Frequencies | Benign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32216 | TBC1D30 | 6691 | uc001ssh.2 | chr12 | 65179791 | 65274798 | + | 300 | 100.0 | 1.69 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 32216 | TBC1D30 | 6691 | uc001ssi.2 | chr12 | 65218352 | 65272411 | + | 300 | 100.0 | 1.02 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 32216 | TBC1D30 | 6691 | uc010sss.2 | chr12 | 65218352 | 65269164 | + | 300 | 100.0 | 1.02 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 32216 | TBC1D30 | 6691 | uc010sst.2 | chr12 | 65218352 | 65274798 | + | 300 | 100.0 | 1.02 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32216 | chr12 | 65220281 | 65220307 | oreganno | OREG0007106 | id:OREG0007106, srow:5779 |
| 32216 | chr12 | 65220238 | 65220248 | phastConsElements100way | lod=36 | score:348, srow:2046385 |
| 32216 | chr12 | 65220282 | 65220289 | phastConsElements100way | lod=57 | score:394, srow:2046386 |
| 32216 | chr12 | 65220298 | 65220306 | phastConsElements100way | lod=63 | score:404, srow:2046387 |
| 32216 | chr12 | 65220458 | 65220464 | phastConsElements100way | lod=13 | score:247, srow:2046388 |
| 32216 | chr12 | 65219144 | 65221143 | cpgShore | — | values(x.gr)[overs$srow, ]:10222 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32216 | cellmeth_recounts | PrEC: 0, LNCaP: 110, DU145: 3 |  |
| 32216 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=88, Length=540, Event=Up, log2FC=Inf, padj=0 |  |
| 32216 | cellmeth_diffreps_LNCaPvsDU145 | A=94.08, B=1.87, Length=520, Event=Down, log2FC=-5.65, padj=0 |  |
| 32216 | cellexp | id=ENSG00000111490, name=TBC1D30, PrEC=113, str=44, LNCaP=2147, str=2716, DU145=1374, str=1531 |  |
| 32216 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 32216 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |