DMR Stats | |
---|---|
Position | chr1:1194651-1194800 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | UBE2J2 (0bp away) |
ANODEV p-value | 0.00511393832828 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6 | UBE2J2 | 54 | uc001adm.4 | chr1 | 1189292 | 1203372 | - | 150 | 100.0 | 1.33 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
6 | UBE2J2 | 54 | uc001ado.3 | chr1 | 1189292 | 1209234 | - | 150 | 100.0 | 1.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
6 | UBE2J2 | 54 | uc001adp.3 | chr1 | 1189292 | 1209234 | - | 150 | 100.0 | 1.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
6 | UBE2J2 | 54 | uc001adq.3 | chr1 | 1189292 | 1209234 | - | 150 | 100.0 | 1.4 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
6 | UBE2J2 | 54 | uc001adr.3 | chr1 | 1189292 | 1209234 | - | 150 | 100.0 | 0.99 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
6 | chr1 | 1194189 | 1194957 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:845, expCount:9, expNums:32,61,62,104,105,123,124,146,192, expScores:232,376,418,374,845,272,253,322,217, srow:2524 |
6 | chr1 | 1194480 | 1194719 | wgEncodeRegTfbsClusteredV3 | REST | score:157, expCount:1, expNums:188, expScores:157, srow:2525 |
6 | chr1 | 1194510 | 1194929 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:222, expCount:1, expNums:199, expScores:222, srow:2526 |
6 | chr1 | 1194525 | 1194834 | wgEncodeRegTfbsClusteredV3 | NR3C1 | score:166, expCount:1, expNums:58, expScores:166, srow:2527 |
6 | chr1 | 1194528 | 1194832 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:599, expCount:1, expNums:368, expScores:599, srow:2528 |
6 | chr1 | 1194615 | 1194924 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:111, expCount:1, expNums:358, expScores:111, srow:2529 |
6 | chr1 | 1192800 | 1194799 | cpgShelf | — | values(x.gr)[overs$srow, ]:58 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
6 | cellmeth_recounts | PrEC: 259, LNCaP: 136, DU145: 18 | |
6 | cellmeth_diffreps_PrECvsLNCaP | A=614, B=178, Length=940, Event=Down, log2FC=-1.79, padj=0 | |
6 | cellmeth_diffreps_PrECvsDU145 | A=626, B=28, Length=1160, Event=Down, log2FC=-4.48, padj=0 | |
6 | cellmeth_diffreps_LNCaPvsDU145 | A=200.98, B=21.51, Length=720, Event=Down, log2FC=-3.22, padj=0 | |
6 | cellexp | id=ENSG00000160087, name=UBE2J2, PrEC=3468, str=2350, LNCaP=4637, str=4816, DU145=2791, str=3114 | |
6 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
6 | tcgaexp | gene=UBE2J2, entrez=118424, pos=chr1:1189292-1209234(-), B=2056, L=2545, M=2565, H=2414 | |
6 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |