DMR Stats | |
---|---|
Position | chr1:1730401-1730550 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | GNB1 (0bp away) |
ANODEV p-value | 0.0208887983625 |
Frequencies | Benign: 4.0 (57.14%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16 | GNB1 | 87 | uc001aif.3 | chr1 | 1716725 | 1822526 | - | 150 | 100.0 | 0.58 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
16 | GNB1 | 87 | uc009vky.3 | chr1 | 1716725 | 1822526 | - | 150 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
16 | cellmeth_recounts | PrEC: 4, LNCaP: 0, DU145: 15 | |
16 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=14.97, Length=260, Event=Up, log2FC=Inf, padj=0.000816028517810598 | |
16 | cellexp | id=ENSG00000078369, name=GNB1, PrEC=38579, str=33386, LNCaP=29543, str=28442, DU145=25531, str=29177 | |
16 | tcgaexp | gene=GNB1, entrez=2782, pos=chr1:1716725-1822526(-), B=21249, L=22376, M=22294, H=24786 | |
16 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
16 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |