DMR Stats | |
---|---|
Position | chr5:172659001-172659750 (View on UCSC) |
Width | 750bp |
Genomic Context | 3' end |
Nearest Genes | NKX2-5 (0bp away) |
ANODEV p-value | 2.08658349858e-10 |
Frequencies | Benign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 5.0 (55.56 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
28342 | NKX2-5 | 23471 | uc003mcm.2 | chr5 | 172659107 | 172662315 | - | 644 | 85.87 | 0.73 | 0 | 0.0 | E1 (0), I1 (0), E2 (85.87) | 100.0 |
28342 | NKX2-5 | 23471 | uc010jjt.2 | chr5 | 172659107 | 172662315 | - | 644 | 85.87 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (85.87) | 100.0 |
28342 | NKX2-5 | 23471 | uc011dfe.2 | chr5 | 172659107 | 172662315 | - | 644 | 85.87 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (85.87) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
28342 | chr5 | 172656203 | 172659049 | cpgShore | — | values(x.gr)[overs$srow, ]:38690 |
28342 | chr5 | 172659091 | 172659102 | phastConsElements100way | lod=23 | score:304, srow:7459419 |
28342 | chr5 | 172659109 | 172659131 | phastConsElements100way | lod=83 | score:431, srow:7459420 |
28342 | chr5 | 172659123 | 172659135 | tfbsConsSites | V$NKX61_01 | score:841, zScore:1.92, srow:4346037 |
28342 | chr5 | 172659166 | 172659181 | tfbsConsSites | V$FREAC7_01 | score:922, zScore:2.9, srow:4346038 |
28342 | chr5 | 172659169 | 172659183 | tfbsConsSites | V$TATA_01 | score:885, zScore:2.07, srow:4346039 |
28342 | chr5 | 172659169 | 172659183 | tfbsConsSites | V$CDPCR3_01 | score:806, zScore:2.08, srow:4346040 |
28342 | chr5 | 172659148 | 172659185 | phastConsElements100way | lod=180 | score:508, srow:7459421 |
28342 | chr5 | 172659196 | 172659197 | phastConsElements100way | lod=16 | score:268, srow:7459422 |
28342 | chr5 | 172658386 | 172659210 | wgEncodeRegDnaseClusteredV2 | 23 | score:570, srow:989600 |
28342 | chr5 | 172659214 | 172659224 | phastConsElements100way | lod=29 | score:327, srow:7459423 |
28342 | chr5 | 172659229 | 172659236 | phastConsElements100way | lod=26 | score:316, srow:7459424 |
28342 | chr5 | 172659119 | 172659264 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:466, expCount:1, expNums:216, expScores:466, srow:3383216 |
28342 | chr5 | 172659333 | 172659335 | phastConsElements100way | lod=16 | score:268, srow:7459425 |
28342 | chr5 | 172659536 | 172659538 | phastConsElements100way | lod=14 | score:255, srow:7459426 |
28342 | chr5 | 172659555 | 172659586 | phastConsElements100way | lod=170 | score:502, srow:7459427 |
28342 | chr5 | 172659592 | 172659592 | cosmic | COSM396585 | srow:992684 |
28342 | chr5 | 172659588 | 172659594 | phastConsElements100way | lod=70 | score:414, srow:7459428 |
28342 | chr5 | 172659597 | 172659604 | phastConsElements100way | lod=70 | score:414, srow:7459429 |
28342 | chr5 | 172659606 | 172659607 | phastConsElements100way | lod=23 | score:304, srow:7459430 |
28342 | chr5 | 172659615 | 172659615 | cosmic | COSM322039 | srow:992685 |
28342 | chr5 | 172659594 | 172659621 | tfbsConsSites | V$PAX5_02 | score:779, zScore:1.96, srow:4346041 |
28342 | chr5 | 172659609 | 172659628 | phastConsElements100way | lod=86 | score:434, srow:7459431 |
28342 | chr5 | 172659630 | 172659640 | phastConsElements100way | lod=82 | score:430, srow:7459432 |
28342 | chr5 | 172659641 | 172659641 | cosmic | COSM367714 | srow:992686 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
28342 | cellmeth_recounts | PrEC: 11, LNCaP: 210, DU145: 44 | |
28342 | cellmeth_diffreps_PrECvsLNCaP | A=9, B=343, Length=1160, Event=Up, log2FC=5.25, padj=0 | |
28342 | cellmeth_diffreps_PrECvsDU145 | A=0, B=20, Length=360, Event=Up, log2FC=Inf, padj=1.02756470669418e-05 | |
28342 | cellmeth_diffreps_LNCaPvsDU145 | A=393.41, B=42.09, Length=1400, Event=Down, log2FC=-3.22, padj=0 | |
28342 | cellexp | id=ENSG00000183072, name=NKX2-5, PrEC=0, str=0, LNCaP=1, str=0, DU145=41, str=76 | |
28342 | tcgameth | site:cg07798980, B=0.48, L=0.62, H=0.6 | |
28342 | tcgameth | site:cg19923650, B=0.08, L=0.31, H=0.42 | |
28342 | tcgaexp | gene=NKX2-5, entrez=1482, pos=chr5:172659107-172662315(-), B=1, L=0, M=5, H=27 |