DMR 30243 chr9:21967201-21969300 (2100bp)
| DMR Stats | |
|---|---|
| Position | chr9:21967201-21969300 (View on UCSC) |
| Width | 2100bp |
| Genomic Context | promoter |
| Nearest Genes | MTAP, CDKN2A, C9orf53 (0bp away) |
| ANODEV p-value | 1.6596797936e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 5.0 (55.56 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30243 | MTAP | 29230 | uc003zpi.1 | chr9 | 21802635 | 22029593 | + | 2100 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0) | 0.0 |
| 30243 | CDKN2A | 29232 | uc003zpj.3 | chr9 | 21967751 | 21974826 | - | 1550 | 73.81 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (50.48), E3 (23.38) | 73.81 |
| 30243 | CDKN2A | 29232 | uc003zpk.3 | chr9 | 21967751 | 21975132 | - | 1550 | 73.81 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (50.48), E3 (23.38) | 73.81 |
| 30243 | CDKN2A | 29233 | uc003zpl.3 | chr9 | 21967751 | 21994490 | - | 1550 | 73.81 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (50.48), E3 (23.38) | 73.81 |
| 30243 | CDKN2A | 29232 | uc010miu.3 | chr9 | 21967751 | 21975132 | - | 1550 | 73.81 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (25.29), E3 (9.38), I3 (15.86), E4 (23.38) | 73.81 |
| 30243 | C9orf53 | 29231 | uc011lnm.3 | chr9 | 21967138 | 21967753 | + | 553 | 26.33 | 0.09 | 0 | 20.81 | E1 (26.33) | 73.95 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30243 | chr9 | 21967200 | 21967451 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:244, expCount:1, expNums:403, expScores:244, srow:4133062 |
| 30243 | chr9 | 21967195 | 21967504 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:133, expCount:1, expNums:358, expScores:133, srow:4133061 |
| 30243 | chr9 | 21967328 | 21967637 | wgEncodeRegTfbsClusteredV3 | BRCA1 | score:180, expCount:1, expNums:342, expScores:180, srow:4133064 |
| 30243 | chr9 | 21967310 | 21967639 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:269, expCount:1, expNums:345, expScores:269, srow:4133063 |
| 30243 | chr9 | 21967081 | 21967675 | wgEncodeRegDnaseClusteredV2 | 31 | score:268, srow:1205398 |
| 30243 | chr9 | 21967786 | 21968030 | wgEncodeRegDnaseClusteredV2 | 17 | score:202, srow:1205399 |
| 30243 | chr9 | 21968159 | 21968159 | cosmic | COSM14252 | srow:1185111 |
| 30243 | chr9 | 21968199 | 21968199 | cosmic | COSM14251 | srow:1185112 |
| 30243 | chr9 | 21968228 | 21968228 | cosmic | COSM1569313 | srow:1185117 |
| 30243 | chr9 | 21968229 | 21968229 | cosmic | COSM13689 | srow:1185118 |
| 30243 | chr9 | 21968201 | 21968235 | wgEncodeRegDnaseClusteredV2 | 2 | score:169, srow:1205400 |
| 30243 | chr9 | 21968228 | 21968241 | cosmic | COSM13591 | srow:1185114 |
| 30243 | chr9 | 21968242 | 21968242 | cosmic | COSM21562 | srow:1185119 |
| 30243 | chr9 | 21968242 | 21968242 | cosmic | COSM99937 | srow:1185120 |
| 30243 | chr9 | 21968243 | 21968243 | cosmic | COSM13518 | srow:1185121 |
| 30243 | chr9 | 21968243 | 21968243 | cosmic | COSM14268 | srow:1185122 |
| 30243 | chr9 | 21968243 | 21968243 | cosmic | COSM13519 | srow:1185123 |
| 30243 | chr9 | 21968248 | 21968248 | cosmic | COSM27145 | srow:1185124 |
| 30243 | chr9 | 21968269 | 21968273 | phastConsElements100way | lod=21 | score:295, srow:9193448 |
| 30243 | chr9 | 21968028 | 21968351 | wgEncodeRegTfbsClusteredV3 | SP1 | score:160, expCount:1, expNums:153, expScores:160, srow:4133066 |
| 30243 | chr9 | 21965748 | 21968358 | cpgShore | — | values(x.gr)[overs$srow, ]:47763 |
| 30243 | chr9 | 21968333 | 21968652 | wgEncodeRegTfbsClusteredV3 | CTCF | score:155, expCount:5, expNums:42,639,644,662,677, expScores:155,130,115,150,123, srow:4133069 |
| 30243 | chr9 | 21968359 | 21968728 | cpgIsland | CpG: 32 | length:370, cpgNum:32, gcNum:236, perCpg:17.3, perGc:63.8, obsExp:0.86, srow:26388 |
| 30243 | chr9 | 21968246 | 21968790 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:339, expCount:2, expNums:358,578, expScores:325,184, srow:4133067 |
| 30243 | chr9 | 21968302 | 21968851 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:369, expCount:1, expNums:168, expScores:369, srow:4133068 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30243 | cellmeth_recounts | PrEC: 5, LNCaP: 126, DU145: 90 |  |
| 30243 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=24, Length=400, Event=Up, log2FC=Inf, padj=5.28495671886566e-07 |  |
| 30243 | cellmeth_diffreps_PrECvsLNCaP | A=6, B=56, Length=560, Event=Up, log2FC=3.22, padj=7.88386571396812e-10 |  |
| 30243 | cellmeth_diffreps_PrECvsDU145 | A=0, B=27, Length=420, Event=Up, log2FC=Inf, padj=9.26891362789191e-08 |  |
| 30243 | cellmeth_diffreps_PrECvsDU145 | A=0, B=12, Length=220, Event=Up, log2FC=Inf, padj=0.00174045876043459 |  |
| 30243 | cellmeth_diffreps_LNCaPvsDU145 | A=39.55, B=6.55, Length=360, Event=Down, log2FC=-2.59, padj=6.66204993264374e-05 |  |
| 30243 | cellexp | id=ENSG00000147889, name=CDKN2A, PrEC=1410, str=2877, LNCaP=1434, str=781, DU145=14955, str=7733 |  |
| 30243 | cellexp | id=ENSG00000224854, name=C9orf53, PrEC=2, str=2, LNCaP=2, str=2, DU145=23, str=27 |  |
| 30243 | cellexp | id=ENSG00000264545, name=RP11-145E5.5, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 30243 | tcgaexp | gene=CDKN2A, entrez=1029, pos=chr9:21967751-21994490(-), B=78, L=114, M=130, H=114 |  |
| 30243 | tcgaexp | gene=MTAP, entrez=4507, pos=chr9:21802635-22029593(+), B=1721, L=1710, M=1618, H=1582 |  |
| 30243 | tcgaexp | gene=C9orf53, entrez=51198, pos=chr9:21967138-21967753(+), B=0, L=0, M=0, H=0 |  |