DMR Stats | |
---|---|
Position | chr1:1474301-1474500 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | TMEM240 (0bp away) |
ANODEV p-value | 0.0119197846413 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12 | TMEM240 | 73 | uc009vkf.3 | chr1 | 1470158 | 1475740 | - | 200 | 100.0 | 0.42 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
12 | chr1 | 1473343 | 1474962 | cpgShore | — | values(x.gr)[overs$srow, ]:171 |
12 | chr1 | 1474186 | 1474555 | wgEncodeRegDnaseClusteredV2 | 10 | score:523, srow:737 |
12 | chr1 | 1474208 | 1474411 | wgEncodeRegTfbsClusteredV3 | SPI1 | score:136, expCount:1, expNums:230, expScores:136, srow:4141 |
12 | chr1 | 1474372 | 1474374 | phastConsElements100way | lod=14 | score:255, srow:7052 |
12 | chr1 | 1474394 | 1474457 | phastConsElements100way | lod=239 | score:536, srow:7053 |
12 | chr1 | 1474396 | 1474418 | tfbsConsSites | V$OCT1_04 | score:845, zScore:2.72, srow:1853 |
12 | chr1 | 1474397 | 1474406 | tfbsConsSites | V$HMX1_01 | score:827, zScore:1.96, srow:1854 |
12 | chr1 | 1474404 | 1474418 | tfbsConsSites | V$OCT1_02 | score:893, zScore:2.73, srow:1855 |
12 | chr1 | 1474444 | 1474461 | tfbsConsSites | V$FOXJ2_01 | score:904, zScore:2.09, srow:1856 |
12 | chr1 | 1474445 | 1474460 | tfbsConsSites | V$FREAC7_01 | score:883, zScore:2.25, srow:1857 |
12 | chr1 | 1474446 | 1474457 | tfbsConsSites | V$HFH1_01 | score:910, zScore:2.52, srow:1858 |
12 | chr1 | 1474446 | 1474458 | tfbsConsSites | V$HFH3_01 | score:920, zScore:2.12, srow:1859 |
12 | chr1 | 1474455 | 1474471 | tfbsConsSites | V$YY1_01 | score:867, zScore:1.82, srow:1860 |
12 | chr1 | 1474460 | 1474468 | phastConsElements100way | lod=31 | score:333, srow:7054 |
12 | chr1 | 1474466 | 1474481 | tfbsConsSites | V$FREAC7_01 | score:852, zScore:1.74, srow:1861 |
12 | chr1 | 1474468 | 1474480 | tfbsConsSites | V$HFH3_01 | score:929, zScore:2.27, srow:1862 |
12 | chr1 | 1474470 | 1474514 | phastConsElements100way | lod=96 | score:445, srow:7055 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
12 | cellmeth_recounts | PrEC: 303, LNCaP: 1307, DU145: 18 | |
12 | cellmeth_diffreps_PrECvsLNCaP | A=2318, B=9570, Length=6220, Event=Up, log2FC=2.05, padj=0 | |
12 | cellmeth_diffreps_PrECvsDU145 | A=476, B=17, Length=680, Event=Down, log2FC=-4.81, padj=0 | |
12 | cellmeth_diffreps_LNCaPvsDU145 | A=11675.04, B=164.63, Length=9520, Event=Down, log2FC=-6.15, padj=0 | |
12 | cellexp | id=ENSG00000205090, name=TMEM240, PrEC=3, str=11, LNCaP=25, str=15, DU145=6, str=0 | |
12 | tcgameth | site:cg16001723, B=0.92, L=0.92, H=0.92 | |
12 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
12 | tcgaexp | gene=TMEM240, entrez=339453, pos=chr1:1470158-1475740(-), B=71, L=79, M=47, H=42 | |
12 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |