DMR Stats | |
---|---|
Position | chr2:85106751-85107800 (View on UCSC) |
Width | 1050bp |
Genomic Context | intron |
Nearest Genes | TRABD2A (0bp away) |
ANODEV p-value | 4.75941825633e-10 |
Frequencies | Benign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26306 | TRABD2A | 16584 | uc002sou.5 | chr2 | 85048791 | 85108369 | - | 1050 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
26306 | TRABD2A | 16584 | uc010fgc.3 | chr2 | 85063043 | 85108369 | - | 1050 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
26306 | TRABD2A | 16584 | uc010ysl.3 | chr2 | 85048791 | 85108369 | - | 1050 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
26306 | chr2 | 85106661 | 85107095 | wgEncodeRegDnaseClusteredV2 | 34 | score:450, srow:632604 |
26306 | chr2 | 85107226 | 85108775 | wgEncodeRegDnaseClusteredV2 | 87 | score:777, srow:632605 |
26306 | chr2 | 85106613 | 85106960 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:214, expCount:2, expNums:100,101, expScores:214,212, srow:2225382 |
26306 | chr2 | 85106636 | 85106965 | wgEncodeRegTfbsClusteredV3 | IRF4 | score:157, expCount:1, expNums:92, expScores:157, srow:2225383 |
26306 | chr2 | 85106643 | 85106862 | wgEncodeRegTfbsClusteredV3 | SPI1 | score:1000, expCount:2, expNums:107,126, expScores:1000,1000, srow:2225384 |
26306 | chr2 | 85106651 | 85106930 | wgEncodeRegTfbsClusteredV3 | BCL11A | score:169, expCount:1, expNums:82, expScores:169, srow:2225385 |
26306 | chr2 | 85106700 | 85106959 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:206, expCount:1, expNums:116, expScores:206, srow:2225386 |
26306 | chr2 | 85106738 | 85106878 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:389, expCount:1, expNums:109, expScores:389, srow:2225387 |
26306 | chr2 | 85107106 | 85108516 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:852, expCount:10, expNums:1,6,13,17,19,21,36,38,40,43, expScores:291,321,528,160,115,852,220,479,513,265, srow:2225388 |
26306 | chr2 | 85107363 | 85107981 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:241, expCount:2, expNums:4,344, expScores:241,182, srow:2225389 |
26306 | chr2 | 85107456 | 85108178 | wgEncodeRegTfbsClusteredV3 | TFAP2C | score:144, expCount:1, expNums:370, expScores:142, srow:2225390 |
26306 | chr2 | 85107582 | 85108322 | wgEncodeRegTfbsClusteredV3 | TFAP2A | score:198, expCount:1, expNums:369, expScores:151, srow:2225391 |
26306 | chr2 | 85107618 | 85108287 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:177, expCount:1, expNums:8, expScores:177, srow:2225392 |
26306 | chr2 | 85107732 | 85108430 | cpgIsland | CpG: 71 | length:699, cpgNum:71, gcNum:482, perCpg:20.3, perGc:69, obsExp:0.86, srow:15169 |
26306 | chr2 | 85105732 | 85107731 | cpgShore | — | values(x.gr)[overs$srow, ]:27291 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
26306 | cellmeth_recounts | PrEC: 5, LNCaP: 43, DU145: 24 | |
26306 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=15, Length=300, Event=Up, log2FC=Inf, padj=0.000225236251108575 | |
26306 | cellexp | id=ENSG00000186854, name=TRABD2A, PrEC=287, str=220, LNCaP=22, str=12, DU145=2198, str=1704 | |
26306 | tcgameth | site:cg01505870, B=0.29, L=0.55, H=0.53 | |
26306 | tcgameth | site:cg03604892, B=0.23, L=0.55, H=0.5 | |
26306 | tcgameth | site:cg07475885, B=0.17, L=0.59, H=0.55 | |
26306 | tcgameth | site:cg08251815, B=0.33, L=0.62, H=0.6 | |
26306 | tcgameth | site:cg14254080, B=0.31, L=0.59, H=0.58 | |
26306 | tcgameth | site:cg16063519, B=0.01, L=0.13, H=0.11 | |
26306 | tcgameth | site:cg18283779, B=0.18, L=0.37, H=0.33 | |
26306 | tcgameth | site:cg20653012, B=0.25, L=0.59, H=0.55 | |
26306 | tcgaexp | gene=TRABD2A, entrez=129293, pos=chr2:85048791-85108369(-), B=30, L=22, M=51, H=33 |